| Welcome to the Tidyverse |
15531 |
| UMAP: Uniform Manifold Approximation and Projection |
7481 |
| seaborn: statistical data visualization |
5153 |
| performance: An R Package for Assessment, Comparison and Testing of Statistical Models |
3412 |
| ggeffects: Tidy Data Frames of Marginal Effects from Regression Models |
1878 |
| hdbscan: Hierarchical density based clustering |
1805 |
| corner.py: Scatterplot matrices in Python |
1711 |
| Pingouin: statistics in Python |
1370 |
| effectsize: Estimation of Effect Size Indices and Standardized Parameters |
1297 |
| Visualizations with statistical details: The ‘ggstatsplot’ approach |
1107 |
| SALib: An open-source Python library for Sensitivity Analysis |
1025 |
| bayestestR: Describing Effects and their Uncertainty, Existence and Significance within the Bayesian Framework |
1005 |
| quanteda: An R package for the quantitative analysis of textual data |
887 |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes |
850 |
| pvlib python: a python package for modeling solar energy systems |
821 |
| qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots |
812 |
| healpy: equal area pixelization and spherical harmonics transforms for data on the sphere in Python |
705 |
| lifelines: survival analysis in Python |
639 |
| tidytext: Text Mining and Analysis Using Tidy Data Principles in R |
588 |
| PyWavelets: A Python package for wavelet analysis |
533 |
| iml: An R package for Interpretable Machine Learning |
504 |
| pyMannKendall: a python package for non parametric Mann Kendall family of trend tests. |
492 |
| tidyLPA: An R Package to Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software |
491 |
| MLxtend: Providing machine learning and data science utilities and extensions to Python’s scientific computing stack |
490 |
| ArviZ a unified library for exploratory analysis of Bayesian models in Python |
461 |
| Armadillo: a template-based C++ library for linear algebra |
458 |
| PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) |
455 |
| sumo: Command-line tools for plotting and analysis of periodic ab initio calculations |
410 |
| dustmaps: A Python interface for maps of interstellar dust |
403 |
| Mosquitto: server and client implementation of the MQTT protocol |
370 |
| Brightway: An open source framework for Life Cycle Assessment |
368 |
| Optim: A mathematical optimization package for Julia |
364 |
| AMReX: a framework for block-structured adaptive mesh refinement |
358 |
| ggalluvial: Layered Grammar for Alluvial Plots |
336 |
| Semi-Automatic Classification Plugin: A Python tool for the download and processing of remote sensing images in QGIS |
335 |
| microViz: an R package for microbiome data visualization and statistics |
324 |
| PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images |
322 |
| Extracting, Computing and Exploring the Parameters of Statistical Models using R |
317 |
| Methods and Algorithms for Correlation Analysis in R |
313 |
| SEP: Source Extractor as a library |
313 |
| UltraNest - a robust, general purpose Bayesian inference engine |
312 |
| PypeIt: The Python Spectroscopic Data Reduction Pipeline |
295 |
| The psycho Package: an Efficient and Publishing-Oriented Workflow for Psychological Science |
295 |
| mlr3: A modern object-oriented machine learning framework in R |
295 |
| sourmash: a library for MinHash sketching of DNA |
290 |
| comorbidity: An R package for computing comorbidity scores |
274 |
| ChainConsumer |
271 |
| Journal of Open Source Software |
265 |
| Gala: A Python package for galactic dynamics |
262 |
| scikit-posthocs: Pairwise multiple comparison tests in Python |
261 |
| CMasher: Scientific colormaps for making accessible, informative and ‘cmashing’ plots |
261 |
| Taguette: open-source qualitative data analysis |
245 |
| Makie.jl: Flexible high-performance data visualization for Julia |
238 |
| nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R |
238 |
| Flux: Elegant machine learning with Julia |
235 |
| Mashtree: a rapid comparison of whole genome sequence files |
231 |
| emcee v3: A Python ensemble sampling toolkit for affine-invariant MCMC |
230 |
| PySwarms: a research toolkit for Particle Swarm Optimization in Python |
228 |
| NN-SVG: Publication-Ready Neural Network Architecture Schematics |
227 |
| Spleeter: a fast and efficient music source separation tool with pre-trained models |
218 |
| hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers |
215 |
| A parallel global multiobjective framework for optimization: pagmo |
215 |
| Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens |
213 |
| rtweet: Collecting and analyzing Twitter data |
211 |
| KADE: A desktop application for Q methodology |
205 |
| heatwaveR: A central algorithm for the detection of heatwaves and cold-spells |
204 |
| geemap: A Python package for interactive mapping with Google Earth Engine |
200 |
| Philentropy: Information Theory and Distance Quantification with R |
193 |
| Calliope: a multi-scale energy systems modelling framework |
189 |
| Augmentor: An Image Augmentation Library for Machine Learning |
186 |
| sbi: A toolkit for simulation-based inference |
185 |
| Altair: Interactive Statistical Visualizations for Python |
180 |
| Gramm: grammar of graphics plotting in Matlab |
179 |
| exoplanet: Gradient-based probabilistic inference for exoplanet data other astronomical time series |
177 |
| academictwitteR: an R package to access the Twitter Academic Research Product Track v2 API endpoint |
175 |
| pycoQC, interactive quality control for Oxford Nanopore Sequencing |
173 |
| DART: Dynamic Animation and Robotics Toolkit |
171 |
| The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing |
170 |
| PySINDy: A Python package for the sparse identification of nonlinear dynamical systems from data |
165 |
| impedance.py: A Python package for electrochemical impedance analysis |
165 |
| ros_control: A generic and simple control framework for ROS |
164 |
| spam: Software for Practical Analysis of Materials |
161 |
| Open-Unmix - A Reference Implementation for Music Source Separation |
158 |
| Ripser.py: A Lean Persistent Homology Library for Python |
153 |
| Surprise: A Python library for recommender systems |
145 |
| The Pencil Code, a modular MPI code for partial differential equations and particles: multipurpose and multiuser-maintained |
142 |
| dolfin-adjoint 2018.1: automated adjoints for FEniCS and Firedrake |
142 |
| q2-sample-classifier: machine-learning tools for microbiome classification and regression |
141 |
| COVID-19 Data Hub |
135 |
| lenstronomy II: A gravitational lensing software ecosystem |
134 |
| jsPsych: Enabling an Open-Source CollaborativeEcosystem of Behavioral Experiments |
129 |
| PySINDy: A comprehensive Python package for robust sparse system identification |
126 |
| PyCM: Multiclass confusion matrix library in Python |
125 |
| EFAtools: An R package with fast and flexible implementations of exploratory factor analysis tools |
125 |
| Rasusa: Randomly subsample sequencing reads to a specified coverage |
123 |
| GIBBON: The Geometry and Image-Based Bioengineering add-On |
123 |
| PySWMM: The Python Interface to Stormwater Management Model (SWMM) |
122 |
| pyOptSparse: A Python framework for large-scaleconstrained nonlinear optimization of sparse systems |
121 |
| rgee: An R package for interacting with Google Earth Engine |
120 |
| Basix: a runtime finite element basis evaluationlibrary |
120 |
| Overlapping: a R package for Estimating Overlapping in Empirical Distributions |
120 |
| DataLad: distributed system for joint management of code, data, and their relationship |
118 |
| TE-dependent analysis of multi-echo fMRI with tedana |
118 |
| quimb: A python package for quantum information and many-body calculations |
113 |
| MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis |
111 |
| countrycode: An R package to convert country names and country codes |
110 |
| EMD: Empirical Mode Decomposition and Hilbert-Huang Spectral Analyses in Python |
109 |
| pvlib python: 2023 project update |
109 |
| Badread: simulation of error-prone long reads |
108 |
| TorchMetrics - Measuring Reproducibility in PyTorch |
108 |
| SCONE: Open Source Software for Predictive Simulation of Biological Motion |
107 |
| momepy: Urban Morphology Measuring Toolkit |
106 |
| The SuiteSparse Matrix Collection Website Interface |
105 |
| Autorank: A Python package for automated ranking of classifiers |
104 |
| Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments |
104 |
| insight: A Unified Interface to Access Information from Model Objects in R |
103 |
| Yellowbrick: Visualizing the Scikit-Learn Model Selection Process |
102 |
| rr2: An R package to calculate \(R^2\)s for regression models |
102 |
| Foolbox Native: Fast adversarial attacks to benchmark the robustness of machine learning models in PyTorch, TensorFlow, and JAX |
102 |
| sjmisc: Data and Variable Transformation Functions |
102 |
| GoFish: Fishing for Line Observations in Protoplanetary Disks |
101 |
| 21cmFAST v3: A Python-integrated C code for generating 3D realizations of the cosmic 21cm signal. |
99 |
| The Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Images |
99 |
| ‘Sequana’: a Set of Snakemake NGS pipelines |
98 |
| SimplyAgree: An R package and jamovi Module forSimplifying Agreement and Reliability Analyses |
98 |
| atlite: A Lightweight Python Package for Calculating Renewable Power Potentials and Time Series |
97 |
| Eureka!: An End-to-End Pipeline for JWST Time-SeriesObservations |
96 |
| matchms - processing and similarity evaluation of mass spectrometry data. |
95 |
| WulffPack: A Python package for Wulff constructions |
95 |
| osmdata |
95 |
| PyClustering: Data Mining Library |
93 |
| IDTxl: The Information Dynamics Toolkit xl: a Python package for the efficient analysis of multivariate information dynamics in networks |
92 |
| ssdtools: An R package to fit Species Sensitivity Distributions |
92 |
| DynamicalSystems.jl: A Julia software library for chaos and nonlinear dynamics |
92 |
| Gridap: An extensible Finite Element toolbox in Julia |
91 |
| Pymer4: Connecting R and Python for Linear Mixed Modeling |
91 |
| PyDMD: Python Dynamic Mode Decomposition |
91 |
| NeuroDiffEq: A Python package for solving differential equations with neural networks |
90 |
| MetalWalls: A classical molecular dynamics software dedicated to the simulation of electrochemical systems |
90 |
| MCMCvis: Tools to Visualize, Manipulate, and Summarize MCMC Output |
89 |
| A MATLAB toolbox to detect and analyze marine heatwaves |
89 |
| SLAM Toolbox: SLAM for the dynamic world |
89 |
| SpiceyPy: a Pythonic Wrapper for the SPICE Toolkit |
88 |
| splithalf: robust estimates of split half reliability |
88 |
| pygtc: beautiful parameter covariance plots (aka. Giant Triangle Confusograms) |
87 |
| Omniscape.jl: Software to compute omnidirectional landscape connectivity |
87 |
| pyhf: pure-Python implementation of HistFactory statistical models |
87 |
| SIMSOPT: A flexible framework for stellarator optimization |
86 |
| tqdm: A Fast, Extensible Progress Meter for Python and CLI |
85 |
| HPX - The C++ Standard Library for Parallelism and Concurrency |
84 |
| BlenderProc2: A Procedural Pipeline for PhotorealisticRendering |
84 |
| kerasR: R Interface to the Keras Deep Learning Library |
84 |
| Chaste: Cancer, Heart and Soft Tissue Environment |
80 |
| FNFT: A Software Library for Computing Nonlinear Fourier Transforms |
80 |
| Multilocus sequence typing by blast from de novo assemblies against PubMLST |
80 |
| Open OnDemand: A web-based client portal for HPC centers |
80 |
| Bam-readcount - rapid generation of basepair-resolution sequence metrics |
79 |
| Larq: An Open-Source Library for Training Binarized Neural Networks |
78 |
| anndata: Access and store annotated datamatrices |
78 |
| grapesAgri1: Collection of Shiny Apps for Data Analysis in Agriculture |
78 |
| pfsspy: A Python package for potential field source surface modelling |
77 |
| see: An R Package for Visualizing Statistical Models |
77 |
| Fast, Consistent Tokenization of Natural Language Text |
77 |
| The MTPy software package for magnetotelluric data analysis and visualisation |
75 |
| SHARPy: A dynamic aeroelastic simulation toolbox for very flexible aircraft and wind turbines |
74 |
| anesthetic: nested sampling visualisation |
72 |
| The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq |
70 |
| opt_einsum - A Python package for optimizing contraction order for einsum-like expressions |
70 |
| Nanoq: ultra-fast quality control for nanopore reads |
70 |
| NeuroDSP: A package for neural digital signal processing |
69 |
| NOMAD: A distributed web-based platform for managingmaterials science research data |
69 |
| eddy: Extracting Protoplanetary Disk Dynamics with Python |
69 |
| qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients |
68 |
| MNE-ICALabel: Automatically annotating ICA componentswith ICLabel in Python |
68 |
| traffic, a toolbox for processing and analysing air traffic data |
68 |
| BrainGlobe Atlas API: a common interface for neuroanatomical atlases |
68 |
| STUMPY: A Powerful and Scalable Python Library for Time Series Data Mining |
68 |
| SkyPortal: An Astronomical Data Platform |
67 |
| scikit-fem: A Python package for finite element assembly |
66 |
| GEMMI: A library for structural biology |
65 |
| piecewise-regression (aka segmented regression) in Python |
64 |
| Hypothesis: A new approach to property-based testing |
63 |
| phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects |
63 |
| PyAutoLens: Open-Source Strong Gravitational Lensing |
62 |
| GRChombo: An adaptable numerical relativity code for fundamental physics |
61 |
| qMRLab: Quantitative MRI analysis, under one umbrella |
61 |
| Pyrodigal: Python bindings and interface to Prodigal,an efficient method for gene prediction in prokaryotes |
61 |
| The Walrus: a library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling |
61 |
| BioPandas: Working with molecular structures in pandas DataFrames |
60 |
| IFermi: A python library for Fermi surface generation and analysis |
60 |
| ENZO: An Adaptive Mesh Refinement Code for Astrophysics (Version 2.6) |
60 |
| Kepler Mapper: A flexible Python implementation of the Mapper algorithm. |
59 |
| Beiwe: A data collection platform for high-throughput digital phenotyping |
59 |
| Computing diffusion coefficients in macromolecular simulations: the Diffusion Coefficient Tool for VMD |
58 |
| ACTIN: A tool to calculate stellar activity indices |
58 |
| aiapy: A Python Package for Analyzing Solar EUV Image Data from AIA |
58 |
| Python Implementation of Codon Adaptation Index |
58 |
| OpenDrop: Open-source software for pendant drop tensiometry contact angle measurements |
58 |
| BGGM: Bayesian Gaussian Graphical Models in R |
57 |
| Oceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUs |
57 |
| Dnaapler: A tool to reorient circular microbialgenomes |
57 |
| Capytaine: a Python-based linear potential flow solver |
57 |
| samgeo: A Python package for segmenting geospatial datawith the Segment Anything Model (SAM) |
56 |
| NeuralHydrology — A Python library for Deep Learningresearch in hydrology |
55 |
| NiaPy: Python microframework for building nature-inspired algorithms |
55 |
| mlpack 3: a fast, flexible machine learning library |
54 |
| BioSigKit: A Matlab Toolbox and Interface for Analysis of BioSignals |
54 |
| weathercan: Download and format weather data from Environment and Climate Change Canada |
54 |
| batchtools: Tools for R to work on batch systems |
53 |
| MLJ: A Julia package for composable machine learning |
53 |
| Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes |
52 |
| RNAsik: A Pipeline for complete and reproducible RNA-seq analysis that runs anywhere with speed and ease |
52 |
| py-pde: A Python package for solving partial differential equations |
52 |
| greta: simple and scalable statistical modelling in R |
52 |
| tidygeocoder: An R package for geocoding |
51 |
| MatSurv: Survival analysis and visualization in MATLAB |
51 |
| tidyHeatmap: an R package for modular heatmap production based on tidy principles |
51 |
| Mordecai: Full Text Geoparsing and Event Geocoding |
51 |
| fgivenx: A Python package for functional posterior plotting |
51 |
| MyQueue: Task and workflow scheduling system |
50 |
| LoadProfileGenerator: An Agent-Based BehaviorSimulation for Generating Residential Load Profiles |
50 |
| W2W: A Python package that injects WUDAPT’s LocalClimate Zone information in WRF |
49 |
| The drake R package: a pipeline toolkit for reproducibility and high-performance computing |
48 |
| AtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI images |
48 |
| QUIT: QUantitative Imaging Tools |
48 |
| edarf: Exploratory Data Analysis using Random Forests |
48 |
| PyBIDS: Python tools for BIDS datasets |
47 |
| mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines |
47 |
| Hoki: Making BPASS accessible through Python |
47 |
| stingray: A modern Python library for spectral timing |
47 |
| OSMnx: A Python package to work with graph-theoretic OpenStreetMap street networks |
47 |
| effmass: An effective mass package |
47 |
| MorphoMetriX: a photogrammetric measurement GUI for morphometric analysis of megafauna |
47 |
| dit: a Python package for discrete information theory |
46 |
| Phonemizer: Text to Phones Transcription for Multiple Languages in Python |
46 |
| POSEIDON: A Multidimensional Atmospheric Retrieval Codefor Exoplanet Spectra |
46 |
| Detecting Fraud in Online Surveys by Tracing, Scoring, and Visualizing IP Addresses |
46 |
| Galore: Broadening and weighting for simulation of photoelectron spectroscopy |
46 |
| kuibit: Analyzing Einstein Toolkit simulations with Python |
46 |
| Cadabra2: computer algebra for field theory revisited |
45 |
| VIP: A Python package for high-contrast imaging |
45 |
| PyPulseq: A Python Package for MRI Pulse Sequence Design |
45 |
| GSODR: Global Summary Daily Weather Data in R |
45 |
| 3dfier: automatic reconstruction of 3D city models |
45 |
| alignparse: A Python package for parsing complex features from high-throughput long-read sequencing |
44 |
| sbpy: A Python module for small-body planetary astronomy |
44 |
| TESPy: Thermal Engineering Systems in Python |
43 |
| bifacial_radiance: a python package for modeling bifacial solar photovoltaic systems |
43 |
| pymdp: A Python library for active inference indiscrete state spaces |
43 |
| Pippin: A pipeline for supernova cosmology |
43 |
| tidyhydat: Extract and Tidy Canadian Hydrometric Data |
43 |
| Bempp-cl: A fast Python based just-in-time compiling boundary element library. |
42 |
| EoN (Epidemics on Networks): a fast, flexible Python package for simulation, analytic approximation, and analysis of epidemics on networks |
42 |
| The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences |
42 |
| hIPPYlib: An Extensible Software Framework for Large-Scale Inverse Problems |
42 |
| pyuvdata: an interface for astronomical interferometeric datasets in python |
42 |
| osrm: Interface Between R and the OpenStreetMap-BasedRouting Service OSRM |
42 |
| BioSimSpace: An interoperable Python framework for biomolecular simulation |
42 |
| swiftsimio: A Python library for reading SWIFT data |
41 |
| RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences |
41 |
| PupillometryR: An R package for preparing and analysing pupillometry data |
41 |
| LiberTEM: Software platform for scalable multidimensional data processing in transmission electron microscopy |
41 |
| pyrolite: Python for geochemistry |
41 |
| Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud |
40 |
| psrqpy: a python interface for querying the ATNF pulsar catalogue |
40 |
| simstudy: Illuminating research methods through data generation |
40 |
| iharm3D: Vectorized General Relativistic Magnetohydrodynamics |
40 |
| oxDNA: coarse-grained simulations of nucleic acids madesimple |
40 |
| PASCal Python: A Principal Axis StrainCalculator |
40 |
| Bedtoolsr: An R package for genomic data analysis and manipulation |
40 |
| GaitPy: An Open-Source Python Package for Gait Analysis Using an Accelerometer on the Lower Back |
40 |
| eLabFTW: An open source laboratory notebook for research labs |
39 |
| doped: Python toolkit for robust and repeatable chargeddefect supercell calculations |
39 |
| kima: Exoplanet detection in radial velocities |
38 |
| starfish: scalable pipelines for image-based transcriptomics |
38 |
| dymos: A Python package for optimal control of multidisciplinary systems |
38 |
| proteoDA: a package for quantitative proteomics |
38 |
| svFSI: A Multiphysics Package for Integrated CardiacModeling |
38 |
| schwimmbad: A uniform interface to parallel processing pools in Python |
38 |
| GAMA: Genetic Automated Machine learning Assistant |
37 |
| SMACT: Semiconducting Materials by Analogy and Chemical Theory |
37 |
| pyscal: A python module for structural analysis of atomic environments |
37 |
| CusToM: a Matlab toolbox for musculoskeletal simulation |
37 |
| datawizard: An R Package for Easy Data Preparation andStatistical Transformations |
37 |
| statsExpressions: R Package for Tidy Dataframes and Expressions with Statistical Details |
37 |
| rsimsum: Summarise results from Monte Carlo simulation studies |
37 |
| dms-view: Interactive visualization tool for deep mutational scanning data |
36 |
| Spiral: splitters for identifiers in source code files |
36 |
| PyMedPhys: A community effort to develop an open,Python-based standard library for medical physics applications |
36 |
| OpenTripPlanner for R |
35 |
| ShakeNBreak: Navigating the defect configurationallandscape |
35 |
| Missingno: a missing data visualization suite |
35 |
| GeneNetwork: framework for web-based genetics |
35 |
| wdpar: Interface to the World Database on ProtectedAreas |
35 |
| Osprey: Hyperparameter Optimization for Machine Learning |
35 |
| ImSwitch: Generalizing microscope control in Python |
35 |
| SIMsalabim: An open-source drift-diffusion simulator for semiconductor devices |
34 |
| AMIRIS: Agent-based Market model for the Investigationof Renewable and Integrated energy Systems |
34 |
| MetSim: A Python package for estimation and disaggregation of meteorological data |
34 |
| pymcmcstat: A Python Package for Bayesian Inference Using Delayed Rejection Adaptive Metropolis |
34 |
| GlobalSensitivity.jl: Performant and Parallel GlobalSensitivity Analysis with Julia |
34 |
| metrica: an R package to evaluate predictionperformance of regression and classification point-forecastmodels |
34 |
| SCIMAP: A Python Toolkit for Integrated SpatialAnalysis of Multiplexed Imaging Data |
34 |
| CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code |
34 |
| SunPy: A Python package for Solar Physics |
34 |
| Using the tidyverse with terra objects: the tidyterrapackage |
34 |
| oce: an R package for Oceanographic Analysis |
34 |
| FitSNAP: Atomistic machine learning with LAMMPS |
33 |
| Verde: Processing and gridding spatial data using Green’s functions |
33 |
| PorousFlow: a multiphysics simulation code for coupled problems in porous media |
33 |
| imager: an R package for image processing based on CImg |
33 |
| phylogram: an R package for phylogenetic analysis with nested lists |
33 |
| mpi4jax: Zero-copy MPI communication of JAX arrays |
33 |
| Optlang: An algebraic modeling language for mathematical optimization |
32 |
| areal: An R package for areal weighted interpolation |
32 |
| Minerva: a light-weight, narrative image browser for multiplexed tissue images |
31 |
| EZyRB: Easy Reduced Basis method |
31 |
| policytree: Policy learning via doubly robust empirical welfare maximization over trees |
31 |
| TransBigData: A Python package for transportationspatio-temporal big data processing, analysis and visualization |
31 |
| UWGeodynamics: A teaching and research tool for numerical geodynamic modelling |
31 |
| pysersic: A Python package for determining galaxystructural properties via Bayesian inference, accelerated withjax |
31 |
| iheatmapr: Interactive complex heatmaps in R |
31 |
| survPen: an R package for hazard and excess hazard modelling with multidimensional penalized splines |
31 |
| GB code: A grain boundary generation code |
31 |
| Tools21cm: A python package to analyse the large-scale 21-cm signal from the Epoch of Reionization and Cosmic Dawn |
31 |
| XGI: A Python package for higher-order interaction networks |
31 |
| CLIMLAB: a Python toolkit for interactive, process-oriented climate modeling |
31 |
| Choco-solver: A Java library for constraintprogramming |
30 |
| salabim: discrete event simulation and animation in Python |
30 |
| pyGPGO: Bayesian Optimization for Python |
30 |
| : Convolutional Neural Networks for Flare Identification in |
30 |
| chirps: API Client for the CHIRPS Precipitation Data in R |
30 |
| Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping |
30 |
| Qiskit Experiments: A Python package to characterizeand calibrate quantum computers |
30 |
| QMRTools: a Mathematica toolbox for quantitative MRI analysis. |
30 |
| Comrade: Composable Modeling of Radio Emission |
29 |
| AgentPy: A package for agent-based modeling in Python |
29 |
| TDEP: Temperature Dependent EffectivePotentials |
29 |
| The Python Sky Model 3 software |
29 |
| ngsxfem: Add-on to NGSolve for geometrically unfitted finite element discretizations |
29 |
| jtools: Analysis and Presentation of Social ScientificData |
29 |
| pyABC: Efficient and robust easy-to-use approximateBayesian computation |
29 |
| DrWatson: the perfect sidekick for your scientific inquiries |
28 |
| Hasasia: A Python package for Pulsar Timing Array Sensitivity Curves |
28 |
| Xbim.Essentials: a library for interoperable building information applications |
28 |
| spant: An R package for magnetic resonance spectroscopy analysis |
28 |
| PyAutoFit: A Classy Probabilistic Programming Language for Model Composition and Fitting |
28 |
| FAT Forensics: A Python Toolbox for Implementing andDeploying Fairness, Accountability and TransparencyAlgorithms in Predictive Systems |
28 |
| EvoMaster: A Search-Based System Test Generation Tool |
28 |
| DeGAUSS: Decentralized Geomarker Assessment for Multi-Site Studies |
28 |
| EUKulele: Taxonomic annotation of the unsung eukaryotic microbes |
28 |
| PyTransport: A Python package for the calculation of inflationary correlation functions |
28 |
| Category Encoders: a scikit-learn-contrib package of transformers for encoding categorical data |
28 |
| DuoDIC: 3D Digital Image Correlation in MATLAB |
28 |
| visdat: Visualising Whole Data Frames |
27 |
| xclim: xarray-based climate data analytics |
27 |
| Chemiscope: interactive structure-property explorer for materials and molecules |
27 |
| chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data |
27 |
| infer: An R package for tidyverse-friendly statistical inference |
27 |
| ‘Spectrum’: Spectral Analysis in Python |
27 |
| CloudnetPy: A Python package for processing cloud remote sensing data |
27 |
| kramersmoyal: Kramers–Moyal coefficients for stochastic processes |
27 |
| smol: A Python package for cluster expansions andbeyond |
27 |
| patRoon 2.0: Improved non-target analysis workflowsincluding automated transformation product screening |
27 |
| biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals |
27 |
| cartography: Create and Integrate Maps in your R Workflow |
26 |
| The MFrontGenericInterfaceSupport project |
26 |
| DeepReg: a deep learning toolkit for medical image registration |
26 |
| kalepy: a Python package for kernel density estimation, sampling and plotting |
26 |
| pySYD: Automated measurements of global asteroseismicparameters |
26 |
| hypr: An R package for hypothesis-driven contrast coding |
26 |
| ungroup: An R package for efficient estimation of smooth distributions from coarsely binned data |
26 |
| pyuvsim: A comprehensive simulation package for radio interferometers in python. |
26 |
| MoFEM: An open source, parallel finite element library |
26 |
| PFEIFER: Preprocessing Framework for Electrograms Intermittently Fiducialized from Experimental Recordings |
26 |
| CliquePercolation: An R Package for conducting and visualizing results of the clique percolation network community detection algorithm |
25 |
| mixR: An R package for Finite Mixture Modeling for Both Raw and Binned Data |
25 |
| 3D reconstruction toolbox for behavior tracked with multiple cameras |
25 |
| CarrierCapture.jl: Anharmonic Carrier Capture |
25 |
| tidynamics: A tiny package to compute the dynamics of stochastic and molecular simulations |
25 |
| pyFBS: A Python package for Frequency Based Substructuring |
25 |
| rrcf: Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams |
25 |
| gwdegree: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models |
25 |
| emg3d: A multigrid solver for 3D electromagnetic diffusion |
25 |
| Jobflow: Computational Workflows Made Simple |
24 |
| PyPortfolioOpt: portfolio optimization in Python |
24 |
| TDAstats: R pipeline for computing persistent homology in topological data analysis |
24 |
| Ginkgo: A high performance numerical linear algebra library |
24 |
| nestcheck: error analysis, diagnostic tests and plots for nested sampling calculations |
24 |
| Zoobot: Adaptable Deep Learning Models for GalaxyMorphology |
24 |
| medrxivr: Accessing and searching medRxiv and bioRxiv preprint data in R |
24 |
| The MCAPL Framework including the Agent Infrastructure Layer an Agent Java Pathfinder |
24 |
| rf: Receiver function calculation in seismology |
24 |
| robustHD: An R package for robust regression with high-dimensional data |
24 |
| FHI-vibes: Ab Initio Vibrational Simulations |
24 |
| PySPOD: A Python package for Spectral Proper Orthogonal Decomposition (SPOD) |
24 |
| RivGraph: Automatic extraction and analysis of river and delta channel network topology |
24 |
| powerbox: A Python package for creating structured fields with isotropic power spectra |
24 |
| psychTestR: An R package for designing and conducting behavioural psychological experiments |
24 |
| Ripserer.jl: flexible and efficient persistent homology computation in Julia |
23 |
| Pycrostates: a Python library to study EEGmicrostates |
23 |
| IGraph/M: graph theory and network analysis forMathematica |
23 |
| datafold: data-driven models for point clouds and time series on manifolds |
23 |
| py-sc-fermi: self-consistent Fermi energies and defectconcentrations from electronic structure calculations |
23 |
| ChemPy: A package useful for chemistry written in Python |
23 |
| Atmospheric Retrievals with petitRADTRANS |
23 |
| floodlight - A high-level, data-driven sports analyticsframework |
23 |
| PICOS: A Python interface to conic optimization solvers |
23 |
| dust_extinction: Interstellar Dust ExtinctionModels |
23 |
| Manif: A micro Lie theory library for state estimation in robotics applications |
22 |
| PlatiPy: Processing Library and Analysis Toolkit forMedical Imaging in Python |
22 |
| open_iA: A tool for processing and visual analysis of industrial computed tomography datasets |
22 |
| swyft: Truncated Marginal Neural Ratio Estimation inPython |
22 |
| biorbd: A C++, Python and MATLAB library to analyze and simulate the human body biomechanics |
22 |
| FullSWOF: Full Shallow-Water equations for Overland Flow |
22 |
| rempsyc: Convenience functions for psychology |
22 |
| Tamaas: a library for elastic-plastic contact of periodic rough surfaces |
22 |
| LTRpred: de novo annotation of intact retrotransposons |
22 |
| Fast k-medoids Clustering in Rust and Python |
22 |
| CollatriX: A GUI to collate MorphoMetriX outputs |
22 |
| drms: A Python package for accessing HMI and AIA data |
22 |
| unyt: Handle, manipulate, and convert data with units in Python |
22 |
| RustBCA: A High-Performance Binary-Collision-Approximation Code for Ion-Material Interactions |
22 |
| pocoMC: A Python package for accelerated Bayesianinference in astronomy and cosmology |
22 |
| presize: An R-package for precision-based sample size calculation in clinical research |
21 |
| Manopt.jl: Optimization on Manifolds in Julia |
21 |
| rustworkx: A High-Performance Graph Library for Python |
21 |
| xml2jupyter: Mapping parameters between XML and Jupyter widgets |
21 |
| pyGeo: A geometry package for multidisciplinary designoptimization |
21 |
| HyRiver: Hydroclimate Data Retriever |
21 |
| Metaheuristics: A Julia Package for Single- andMulti-Objective Optimization |
21 |
| hal9001: Scalable highly adaptive lasso regression in R |
21 |
| osfr: An R Interface to the Open Science Framework |
21 |
| Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment |
21 |
| PerMetrics: A Framework of Performance Metrics forMachine Learning Models |
21 |
| MPA: a novel cross-language API for time series analysis |
21 |
| X-PSI: A Python package for neutron star X-ray pulsesimulation and inference |
21 |
| MDEntropy: Information-Theoretic Analyses for Molecular Dynamics |
21 |
| GrainSizeTools: a Python script for grain size analysis and paleopiezometry based on grain size |
21 |
| eemont: A Python package that extends Google Earth Engine |
20 |
| tabula: An R Package for Analysis, Seriation, and Visualization of Archaeological Count Data |
20 |
| DBSP_DRP: A Python package for automated spectroscopicdata reduction of DBSP data |
20 |
| PeleLMeX: an AMR Low Mach Number Reactive FlowSimulation Code without level sub-cycling |
20 |
| disksurf: Extracting the 3D Structure of Protoplanetary Disks |
20 |
| Cabana: A Performance Portable Library forParticle-Based Simulations |
20 |
| Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset XML Dataset |
20 |
| FixedPointFinder: A Tensorflow toolbox for identifying and characterizing fixed points in recurrent neural networks |
20 |
| NCBImeta: efficient and comprehensive metadata retrieval from NCBI databases |
20 |
| Traja: A Python toolbox for animal trajectory analysis |
20 |
| fctSnPM: Factorial ANOVA and post-hoc tests for Statistical nonParametric Mapping in MATLAB |
20 |
| HRV: a Pythonic package for Heart Rate Variability Analysis |
20 |
| ReferenceSeeker: rapid determination of appropriate reference genomes |
20 |
| Multiphonon: Phonon Density of States tools for Inelastic Neutron Scattering Powder Data |
20 |
| fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms |
20 |
| Feature-engine: A Python package for feature engineering for machine learning |
20 |
| Kanapy: A Python package for generating complex synthetic polycrystalline microstructures |
20 |
| MOTES: Modeling of Tensegrity Structures |
20 |
| Windrose: A Python Matplotlib, Numpy library to manage wind and pollution data, draw windrose |
20 |
| Systole: A python package for cardiac signal synchrony and analysis |
20 |
| MiSTree: a Python package for constructing and analysing Minimum Spanning Trees |
20 |
| Cylc: A Workflow Engine for Cycling Systems |
20 |
| TSrepr R package: Time Series Representations |
20 |
| normflows: A PyTorch Package for NormalizingFlows |
20 |
| mlpack 4: a fast, header-only C++ machine learninglibrary |
19 |
| PyAMG: Algebraic Multigrid Solvers in Python |
19 |
| ExoTETHyS: Tools for Exoplanetary Transits around host stars |
19 |
| GCM-Filters: A Python Package for Diffusion-based Spatial Filtering of Gridded Data |
19 |
| sourmash v4: A multitool to quickly search, compare,and analyze genomic and metagenomic data sets |
19 |
| Shenfun: High performance spectral Galerkin computing platform |
19 |
| PyAutoGalaxy: Open-Source Multiwavelength GalaxyStructure & Morphology |
19 |
| ytree: A Python package for analyzing merger trees |
19 |
| nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline |
19 |
| pyMARS: automatically reducing chemical kinetic models in Python |
19 |
| AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System |
19 |
| Netwulf: Interactive visualization of networks in Python |
19 |
| Pose2Sim: An open-source Python package for multiviewmarkerless kinematics |
19 |
| EPyT: An EPANET-Python Toolkit for Smart Water NetworkSimulations |
18 |
| INCHEM-Py: An open source Python box model for indoor air chemistry |
18 |
| shapr: An R-package for explaining machine learning models with dependence-aware Shapley values |
18 |
| LEGWORK: A python package for computing the evolution and detectability of stellar-origin gravitational-wave sources with space-based detectors |
18 |
| ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces |
18 |
| hankel: A Python library for performing simple and accurate Hankel transformations |
18 |
| ExoTiC-LD: thirty seconds to stellar limb-darkeningcoefficients |
18 |
| SimpleFOC: A Field Oriented Control (FOC) Library forControlling Brushless Direct Current (BLDC) and Stepper Motors |
18 |
| Effective-Quadratures (EQ): Polynomials for Computational Engineering Studies |
18 |
| HeuDiConv — flexible DICOM conversion into structureddirectory layouts |
18 |
| Rule-based integration: An extensive system of symbolic integration rules |
18 |
| PyFstat: a Python package for continuous gravitational-wave data analysis |
18 |
| RHEA: an open-source Reproducible Hybrid-architectureflow solver Engineered for Academia |
18 |
| Confidence Intervals for Random Forests in Python |
18 |
| MSG: A software package for interpolating stellarspectra in pre-calculated grids |
18 |
| Isoreader: An R package to read stable isotope data files for reproducible research |
18 |
| Neuropsydia.py: A Python Module for Creating Experiments, Tasks and Questionnaires |
17 |
| netrd: A library for network reconstruction and graph distances |
17 |
| ampscan: A lightweight Python package for shape analysis of prosthetics and orthotics |
17 |
| pylustrator: code generation for reproducible figures for publication |
17 |
| calorine: A Python package for constructing andsampling neuroevolution potential models |
17 |
| GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs GPUs |
17 |
| Sarracen: a Python package for analysis andvisualization of smoothed particle hydrodynamics data |
17 |
| SysIdentPy: A Python package for System Identification using NARMAX models |
17 |
| COINr: An R package for developing compositeindicators |
17 |
| pysrim: Automation, Analysis, and Plotting of SRIM Calculations |
17 |
| Surfaxe: Systematic surface calculations |
17 |
| imodels: a python package for fitting interpretable models |
17 |
| The Experiment Factory: Reproducible Experiment Containers |
17 |
| Easy SimAuto (ESA): A Python Package that Simplifies Interacting with PowerWorld Simulator |
17 |
| Limbo: A Flexible High-performance Library for Gaussian Processes modeling and Data-Efficient Optimization |
17 |
| CluSim: a python package for calculating clustering similarity |
17 |
| TaylorSeries.jl: Taylor expansions in one and several variables in Julia |
17 |
| GridapDistributed: a massively parallel finite elementtoolbox in Julia |
17 |
| WEPPCLIFF: A command-line tool to process climate inputs for soil loss models |
16 |
| BioPsyKit: A Python package for the analysis of biopsychological data |
16 |
| ExoTiC-ISM: A Python package for marginalised exoplanet transit parameters across a grid of systematic instrument models |
16 |
| ClimDown: Climate Downscaling in R |
16 |
| CCA-Zoo: A collection of Regularized, Deep Learning based, Kernel, and Probabilistic CCA methods in a scikit-learn style framework |
16 |
| SlideRule: Enabling rapid, scalable, open science forthe NASA ICESat-2 mission and beyond |
16 |
| PyZFS: A Python package for first-principles calculations of zero-field splitting tensors |
16 |
| RHEOS.jl – A Julia Package for Rheology Data Analysis |
16 |
| ROSS - Rotordynamic Open Source Software |
16 |
| The MOOSE Thermal Hydraulics Module |
16 |
| SISSO++: A C++ Implementation of the Sure-IndependenceScreening and Sparsifying Operator Approach |
16 |
| PsychroLib: a library of psychrometric functions to calculate thermodynamic properties of air |
16 |
| rintrojs: A Wrapper for the Intro.js Library |
16 |
| GeoClimate: a Geospatial processing toolbox for environmental and climate studies |
16 |
| SummationByPartsOperators.jl: A Julia library of provably stable discretization techniques with mimetic properties |
16 |
| SimuPy: A Python framework for modeling and simulating dynamical systems |
16 |
| Viime: Visualization and Integration of Metabolomics Experiments |
16 |
| LATTE: Lightcurve Analysis Tool for Transiting Exoplanets |
16 |
| HydroMT: Automated and reproducible model building andanalysis |
16 |
| plater: Read, Tidy, and Display Data from Microtiter Plates |
15 |
| Stripy: A Python module for (constrained) triangulation in Cartesian coordinates and on a sphere. |
15 |
| pypillometry: A Python package for pupillometric analyses |
15 |
| Nashpy: A Python library for the computation of Nash equilibria |
15 |
| Xenomapper: Mapping reads in a mixed species context |
15 |
| Habfuzz: A tool to calculate the instream hydraulic habitat suitability using fuzzy logic and fuzzy Bayesian inference |
15 |
| morphMan: Automated manipulation of vascular geometries |
15 |
| Your: Your Unified Reader |
15 |
| Linopy: Linear optimization with n-dimensional labeledvariables |
15 |
| PETRARCH2: Another Event Coding Program |
15 |
| Agents.jl: agent-based modeling framework in Julia |
15 |
| gmr: Gaussian Mixture Regression |
15 |
| Intracranial Electrode Location and Analysis in MNE-Python |
15 |
| Omnizart: A General Toolbox for Automatic Music Transcription |
15 |
| Blimpy: Breakthrough Listen I/O Methods for Python |
15 |
| AxoPy: A Python Library for Implementing Human-Computer Interface Experiments |
15 |
| musclesyneRgies: factorization of electromyographicdata in R with sensible defaults |
15 |
| turtleFSI: A Robust and Monolithic FEniCS-based Fluid-Structure Interaction Solver |
15 |
| AddaxAI: A no-code platform to train and deploy custom YOLOv5 object detection models |
15 |
| TsgFEM: Tensegrity Finite Element Method |
15 |
| stats19: A package for working with open road crash data |
15 |
| RHEIA: Robust design optimization of renewable Hydrogenand dErIved energy cArrier systems |
15 |
| stardate: Combining dating methods for better stellar ages |
15 |
| BayesFlow: Amortized Bayesian Workflows With NeuralNetworks |
15 |
| libCEED: Fast algebra for high-order element-based discretizations |
15 |
| micompm: A MATLAB/Octave toolbox for multivariate independent comparison of observations |
15 |
| kdensity: An R package for kernel density estimation with parametric starts and asymmetric kernels |
15 |
| Multiblock PLS: Block dependent prediction modeling for Python |
15 |
| RxInfer: A Julia package for reactive real-timeBayesian inference |
15 |
| JuliaCall: an R package for seamless integration between R and Julia |
15 |
| exoTEDRF: An EXOplanet Transit and Eclipse DataReduction Framework |
15 |
| Tyssue: an epithelium simulation library |
15 |
| FOXES: Farm Optimization and eXtended yield EvaluationSoftware |
14 |
| ORION2: A magnetohydrodynamics code for star formation |
14 |
| pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems |
14 |
| coronagraph: Telescope Noise Modeling for Exoplanets in Python |
14 |
| catwoman: A transit modelling Python package forasymmetric light curves |
14 |
| lattice-symmetries: A package for working with quantum many-body bases |
14 |
| easyunfold: A Python package for unfolding electronicband structures |
14 |
| remBoot: An R package for Random Encounter Modelling |
14 |
| containerit: Generating Dockerfiles for reproducible research with R |
14 |
| Sync Toolbox: A Python Package for Efficient, Robust, and Accurate Music Synchronization |
14 |
| Kindel: indel-aware consensus for nucleotide sequence alignments |
14 |
| ASCENDS: Advanced data SCiENce toolkit for Non-Data Scientists |
14 |
| GPJax: A Gaussian Process Framework in JAX |
14 |
| CESAR-P: A dynamic urban building energy simulationtool |
14 |
| imea: A Python package for extracting 2D and 3D shape measurements from images |
14 |
| chronovise: Measurement-Based Probabilistic Timing Analysis framework |
14 |
| FastGeodis: Fast Generalised Geodesic DistanceTransform |
14 |
| BurnMan – a Python toolkit for planetary geophysics,geochemistry and thermodynamics |
14 |
| universalmotif: An R package for biological motifanalysis |
14 |
| libfmp: A Python Package for Fundamentals of Music Processing |
14 |
| TextDescriptives: A Python package for calculating alarge variety of metrics from text |
14 |
| ggvoronoi: Voronoi Diagrams and Heatmaps with ggplot2 |
14 |
| xpecgen: A program to calculate x-ray spectra generated in tungsten anodes |
14 |
| ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code |
14 |
| SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue |
14 |
| Re-Envisioning Numerical Information Field Theory(NIFTy.re): A Library for Gaussian Processes and VariationalInference |
14 |
| spopt: a python package for solving spatialoptimization problems in PySAL |
14 |
| filltex: Automatic queries to ADS and INSPIRE databases to fill LaTex bibliography |
14 |
| Frites: A Python package for functional connectivityanalysis and group-level statistics of neurophysiological data |
14 |
| PyNumDiff: A Python package for numericaldifferentiation of noisy time-series data |
14 |
| Krylov.jl: A Julia basket of hand-picked Krylovmethods |
14 |
| pybeach: A Python package for extracting the location of dune toes on beach profile transects |
14 |
| Fruitbat: A Python Package for Estimating Redshifts of Fast Radio Bursts |
14 |
| StatAid: An R package with a graphical user interface for data analysis |
14 |
| flowMC: Normalizing flow enhanced sampling package forprobabilistic inference in JAX |
14 |
| smot: a python package and CLI tool for contextualphylogenetic subsampling |
13 |
| mpnum: A matrix product representation library for Python |
13 |
| A Framework to Quality Control Oceanographic Data |
13 |
| FluxCalR: a R package for calculating CO2 and CH4 fluxes from static chambers |
13 |
| VIVO: a system for research discovery |
13 |
| GEM: A Python package for graph embedding methods |
13 |
| RiskPortfolios: Computation of Risk-Based Portfolios in R |
13 |
| flux-data-qaqc: A Python Package for Energy Balance Closure and Post-Processing of Eddy Flux Data |
13 |
| surfinpy: A Surface Phase Diagram Generator |
13 |
| Python Active-subspaces Utility Library |
13 |
| pdfsearch: Search Tools for PDF Files |
13 |
| DetecTree: Tree detection from aerial imagery in Python |
13 |
| matador: a Python library for analysing, curating and performing high-throughput density-functional theory calculations |
13 |
| nap: A molecular dynamics package with parameter-optimization programs for classical and machine-learning potentials |
13 |
| Coral: a parallel spectral solver for fluid dynamics and partial differential equations |
13 |
| Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data |
13 |
| OctApps: a library of Octave functions for continuous gravitational-wave data analysis |
13 |
| solid_dmft: gray-boxing DFT+DMFT materials simulationswith TRIQS |
13 |
| COMPAS: A rapid binary population synthesis suite |
13 |
| GeoStats.jl – High-performance geostatistics in Julia |
13 |
| climpred: Verification of weather and climate forecasts |
13 |
| WhaleMap: a tool to collate and display whale survey results in near real-time |
13 |
| SNEWPY: A Data Pipeline from Supernova Simulations to Neutrino Signals |
13 |
| ewstools: A Python package for early warning signals ofbifurcations in time series data |
13 |
| PyBox: An automated box-model generator for atmospheric chemistry and aerosol simulations. |
13 |
| modelStudio: Interactive Studio with Explanations for ML Predictive Models |
13 |
| oolong: An R package for validating automated content analysis tools |
13 |
| OApackage: A Python package for generation and analysis of orthogonal arrays, optimal designs and conference designs |
13 |
| LISC: A Python Package for Scientific Literature Collection and Analysis |
13 |
| MUQ: The MIT Uncertainty Quantification Library |
13 |
| cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology |
13 |
| DEVSIM: A TCAD Semiconductor Device Simulator |
13 |
| TTLocVis: A Twitter Topic Location Visualization Package |
13 |
| PolSAR tools: A QGIS plugin for generating SAR descriptors |
13 |
| gratia: An R package for exploring generalized additive models |
13 |
| UQit: A Python package for uncertainty quantification (UQ) in computational fluid dynamics (CFD) |
13 |
| PyCS3: A Python toolbox for time-delay measurements in lensed quasars |
13 |
| NetworkSedimentTransporter: A Landlab component for bed material transport through river networks |
13 |
| STARRED: a two-channel deconvolution method withStarlet regularization |
12 |
| OGRe: An Object-Oriented General Relativity Package for Mathematica |
12 |
| itmlogic: The Irregular Terrain Model by Longley and Rice |
12 |
| SAILS: Spectral Analysis In Linear Systems |
12 |
| EnsembleKalmanProcesses.jl: Derivative-freeensemble-based model calibration |
12 |
| USAboundaries: Historical and Contemporary Boundaries of the United States of America |
12 |
| Kinetics Toolkit: An Open-Source Python Package to Facilitate Research in Biomechanics |
12 |
| Nyx: A Massively Parallel AMR Code for Computational Cosmology |
12 |
| scikit-finite-diff, a new tool for PDE solving |
12 |
| Pyglmnet: Python implementation of elastic-net regularized generalized linear models |
12 |
| rbmi: A R package for standard and reference-basedmultiple imputation methods |
12 |
| ECNet: Large scale machine learning projects for fuel property prediction |
12 |
| gym-electric-motor (GEM): A Python toolbox for the simulation of electric drive systems |
12 |
| scanstatistics: space-time anomaly detection using scan statistics |
12 |
| OSTIR: open source translation initiation rate prediction |
12 |
| FURY: advanced scientific visualization |
12 |
| spatial-efd: A spatial-aware implementation of elliptical Fourier analysis |
12 |
| qualtRics: retrieve survey data using the Qualtrics API |
12 |
| rTASSEL: An R interface to TASSEL for analyzing genomicdiversity |
12 |
| pymatgen-analysis-defects: A Python package foranalyzing point defects in crystalline materials |
12 |
| ppiclF: A Parallel Particle-In-Cell Library in Fortran |
12 |
| dataquieR: assessment of data quality in epidemiological research |
12 |
| COINSTAC: Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation |
12 |
| thurstonianIRT: Thurstonian IRT Models in R |
12 |
| GBOML: Graph-Based Optimization ModelingLanguage |
12 |
| PyVISA: the Python instrumentation package |
12 |
| Kinetic.jl: A portable finite volume toolbox for scientific and neural computing |
12 |
| PyMatting: A Python Library for Alpha Matting |
12 |
| quantile-forest: A Python Package for QuantileRegression Forests |
12 |
| pyCSEP: A Python Toolkit For Earthquake Forecast Developers |
12 |
| bfit: A Python Application For Beta-Detected NMR |
11 |
| diyepw: A Python package for Do-It-Yourself EnergyPlus weather file generation |
11 |
| alchemlyb: the simple alchemistry library |
11 |
| ezc3d: An easy C3D file I/O cross-platform solution for C++, Python and MATLAB |
11 |
| mTRFpy: A Python package for temporal response functionanalysis |
11 |
| pynucastro: an interface to nuclear reaction rates and code generator for reaction network equations |
11 |
| PySensors: A Python package for sparse sensor placement |
11 |
| FAME-Core: An open Framework for distributedAgent-based Modelling of Energy systems |
11 |
| PyAMG: Algebraic Multigrid Solvers in Python |
11 |
| SleepPy: A python package for sleep analysis from accelerometer data |
11 |
| toughio: Pre- and post-processing Python library for TOUGH |
11 |
| Madym: A C++ toolkit for quantitative DCE-MRI analysis |
11 |
| MSMExplorer: Data Visualizations for Biomolecular Dynamics |
11 |
| Pooch: A friend to fetch your data files |
11 |
| genomepy: download genomes the easy way |
11 |
| GPUE: Graphics Processing Unit Gross–Pitaevskii Equation solver |
11 |
| libRL: A Python library for the characterization of microwave absorption |
11 |
| multimatch-gaze: The MultiMatch algorithm for gaze path comparison in Python |
11 |
| MG-MAMPOSSt, a Fortran code to test gravity atgalaxy-cluster scales |
11 |
| Thermosteam: BioSTEAM’s Premier Thermodynamic Engine |
11 |
| MTEX2Gmsh: a tool for generating 2D meshes from EBSD data |
11 |
| TEfits: Nonlinear regression for time-evolving indices |
11 |
| mhealthtools: A Modular R Package for Extracting Features from Mobile and Wearable Sensor Data |
11 |
| Scientific Computational Imaging Code (SCICO) |
11 |
| Black-it: A Ready-to-Use and Easy-to-Extend CalibrationKit for Agent-based Models |
11 |
| dlmmc: Dynamical linear model regression for atmospheric time-series analysis |
11 |
| binary_c-python: A Python-based stellar populationsynthesis tool and interface to binary_c |
11 |
| FlowSieve: A Coarse-Graining Utility for GeophysicalFlows on the Sphere |
11 |
| mosartwmpy: A Python implementation of the MOSART-WM coupled hydrologic routing and water management model |
11 |
| X.509-Compliant Hybrid Certificates for the Post-Quantum Transition |
11 |
| Telewavesim: Python software for teleseismic body wave modeling |
11 |
| NodeLab: A MATLAB package for meshfree node-generation and adaptive refinement |
11 |
| BASICO: A simplified Python interface to COPASI |
11 |
| liionpack: A Python package for simulating packs of batteries with PyBaMM |
11 |
| DmpBbo: A versatile Python/C++ library for Function Approximation, Dynamical Movement Primitives, and Black-Box Optimization |
11 |
| hawen: time-harmonic wave modeling and inversion using hybridizable discontinuous Galerkin discretization |
10 |
| qgs: A flexible Python framework of reduced-order multiscale climate models |
10 |
| 3D Line Radiative Transfer & Synthetic Observationswith Magritte |
10 |
| Hytool: an open source matlab toolbox for the interpretation of hydraulic tests using analytical solutions |
10 |
| Physics-Informed Neural networks for Advancedmodeling |
10 |
| haldensify: Highly adaptive lasso conditional density estimation in R |
10 |
| DEEPaaS API: a REST API for Machine Learning and Deep Learning models |
10 |
| matscipy: materials science at the atomic scale withPython |
10 |
| PyNomaly: Anomaly detection using Local Outlier Probabilities (LoOP). |
10 |
| Varistran: Anscombe’s variance stabilizing transformation for RNA-seq gene expression data |
10 |
| HostPhot: global and local photometry of galaxieshosting supernovae or other transients |
10 |
| popeye: a population receptive field estimation tool |
10 |
| DIRECT: Deep Image REConstruction Toolkit |
10 |
| rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) ‘Quick Stats’ API |
10 |
| Climate variability indices for ecological and cropmodels in R: the climatrends package |
10 |
| DearEIS - A GUI program for analyzing impedancespectra |
10 |
| NiaARM: A minimalistic framework for NumericalAssociation Rule Mining |
10 |
| HylleraasMD: Massively parallel hybrid particle-fieldmolecular dynamics in Python |
10 |
| aorsf: An R package for supervised learning using theoblique random survival forest |
10 |
| DeepOF: a Python package for supervised andunsupervised pattern recognition in mice motion tracking data |
10 |
| torchquad: Numerical Integration in Arbitrary Dimensions with PyTorch |
10 |
| AltaiPony - Flare science in Kepler, K2 and TESS light curves |
10 |
| SpmImage Tycoon: Organize and analyze scanning probemicroscopy data |
10 |
| PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics |
10 |
| OMG: A Scalable and Flexible Simulation and Testing Environment Toolbox for Intelligent Microgrid Control |
10 |
| ODES: a high level interface to ODE and DAE solvers |
10 |
| graynet: single-subject morphometric networks for neuroscience connectivity applications |
10 |
| covidregionaldata: Subnational data for COVID-19 epidemiology |
10 |
| Retriever: Data Retrieval Tool |
10 |
| GroundwaterDupuitPercolator: A Landlab component for groundwater flow |
10 |
| hydroscoper: R interface to the Greek National Data Bank for Hydrological and Meteorological Information |
10 |
| Tide Model Driver for MATLAB |
10 |
| DiffCapAnalyzer: A Python Package for Quantitative Analysis of Total Differential Capacity Data |
10 |
| RayFlare: flexible optical modelling of solar cells |
10 |
| sntools: An event generator for supernova burst neutrinos |
10 |
| morse: an R-package to analyse toxicity test data |
10 |
| OPEM : Open Source PEM Cell Simulation Tool |
10 |
| fleck: Fast approximate light curves for starspot rotational modulation |
10 |
| The Climate Equity Reference Calculator |
10 |
| RefManageR: Import and Manage BibTeX and BibLaTeX References in R |
10 |
| deeplenstronomy: A dataset simulation package for strong gravitational lensing |
10 |
| Dryft: A Python and MATLAB package to correct drifting ground reaction force signals during treadmill running |
10 |
| tsfeaturex: An R Package for Automating Time Series Feature Extraction |
10 |
| elmada: Dynamic electricity carbon emission factors and prices for Europe |
10 |
| ALPPACA - A tooL for Prokaryotic Phylogeny AndClustering Analysis |
10 |
| dorado: A Python package for simulating passive particle transport in shallow-water flows |
10 |
| Excimontec v1.0: An Open-Source Software Tool for Kinetic Monte Carlo Simulations of Organic Electronic Devices |
10 |
| GEOS: A performance portable multi-physics simulationframework for subsurface applications |
10 |
| Ryacas: A computer algebra system in R |
10 |
| Synthia: multidimensional synthetic data generation in Python |
10 |
| bomrang: Fetch Australian Government Bureau of Meteorology Data in R |
10 |
| Opyrability: A Python package for process operabilityanalysis |
10 |
| Matching: A Python library for solving matching games |
10 |
| logKDE: log-transformed kernel density estimation |
10 |
| EISPAC - The EIS Python Analysis Code |
10 |
| Disimpy: A massively parallel Monte Carlo simulator for generating diffusion-weighted MRI data in Python |
10 |
| ALNS: a Python implementation of the adaptive largeneighbourhood search metaheuristic |
10 |
| Hickle: A HDF5-based python pickle replacement |
10 |
| Qiskit Dynamics: A Python package for simulating thetime dynamics of quantum systems |
10 |
| ImagingReso: A Tool for Neutron Resonance Imaging |
10 |
| ogs6py and VTUinterface: streamlining OpenGeoSys workflows in Python |
10 |
| GGLasso - a Python package for General Graphical Lasso computation |
10 |
| Quasi-Monte Carlo Methods in Python |
10 |
| QDistRnd: A GAP package for computing the distance ofquantum error-correcting codes |
9 |
| NoisySignalIntegration.jl: A Julia package for uncertainty evaluation of numeric integrals |
9 |
| latentcor: An R Package for estimating latent correlations from mixed data types |
9 |
| ScenTrees.jl: A Julia Package for Generating Scenario Trees and Scenario Lattices for Multistage Stochastic Programming |
9 |
| eigentools: A Python package for studying differential eigenvalue problems with an emphasis on robustness |
9 |
| tidyfst: Tidy Verbs for Fast Data Manipulation |
9 |
| pirecorder: Controlled and automated image and video recording with the raspberry pi |
9 |
| PyUnfold: A Python package for iterative unfolding |
9 |
| A News Verification Browser for the Detection of Clickbait, Satire, and Falsified News |
9 |
| pytransform3d: 3D Transformations for Python |
9 |
| medoutcon: Nonparametric efficient causal mediation analysis with machine learning in R |
9 |
| radioactivedecay: A Python package for radioactive decay calculations |
9 |
| dantro: a Python package for handling, transforming,and visualizing hierarchically structured data |
9 |
| diff_classifier: Parallelization of multi-particle tracking video analyses |
9 |
| Time-frequency component of the GreenX library: minimaxgrids for efficient RPA and GW calculations |
9 |
| A-SLOTH: Ancient Stars and Local Observables by TracingHalos |
9 |
| TSInterpret: A Python Package for the Interpretabilityof Time Series Classification |
9 |
| MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows |
9 |
| HODLRlib: A Library for Hierarchical Matrices |
9 |
| open Delft Advanced Research Terra Simulator(open-DARTS) |
9 |
| pyomeca: An Open-Source Framework for Biomechanical Analysis |
9 |
| agweather-qaqc: An Interactive Python Package forQuality Assurance and Quality Control of Daily Agricultural Weather Dataand Calculation of Reference Evapotranspiration |
9 |
| phyphy: Python package for facilitating the execution and parsing of HyPhy standard analyses |
9 |
| tell: a Python package to model future totalelectricity loads in the United States |
9 |
| Chips-n-Salsa: A Java Library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms |
9 |
| BluVision Macro - a software for automated powdery mildew and rust disease quantification on detached leaves. |
9 |
| register: Registration for Exponential Family Functional Data |
9 |
| LobsterPy: A package to automatically analyze LOBSTERruns |
9 |
| JMcDM: A Julia package for multiple-criteria decision-making tools |
9 |
| PyStokes: phoresis and Stokesian hydrodynamics in Python |
9 |
| Bacting: a next generation, command line version of Bioclipse |
9 |
| PySDM v1: particle-based cloud modeling package forwarm-rain microphysics and aqueous chemistry |
9 |
| c14bazAAR: An R package for downloading and preparing C14 dates from different source databases |
9 |
| PySD: System Dynamics Modeling in Python |
9 |
| ThermoParser: Streamlined Analysis of ThermoelectricProperties |
9 |
| ALVA: An adaptive MATLAB package for layered viscoelastic analysis |
9 |
| origami: A Generalized Framework for Cross-Validation in R |
9 |
| cRacklet: a spectral boundary integral method library for interfacial rupture simulation |
9 |
| xtal2png: A Python package for representing crystalstructure as PNG files |
9 |
| BioGears: A C++ library for whole body physiology simulations |
9 |
| kinisi: Bayesian analysis of mass transport frommolecular dynamics simulations |
9 |
| ldaPrototype: A method in R to get a Prototype of multiple Latent Dirichlet Allocations |
9 |
| PyMarket - A simple library for simulating markets in Python |
9 |
| Utopia: A Comprehensive and Collaborative ModelingFramework for Complex and Evolving Systems |
9 |
| GasChromatographySimulator.jl |
9 |
| CLOVER: A modelling framework for sustainablecommunity-scale energy systems |
9 |
| dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform |
9 |
| Port: A software tool for digital data donation |
9 |
| tipr: An R package for sensitivity analyses forunmeasured confounders |
9 |
| Water Systems Integrated Modelling framework, WSIMOD: APython package for integrated modelling of water quality and quantityacross the water cycle |
9 |
| MiscMetabar: an R package to facilitate visualizationand reproducibility in metabarcoding analysis |
9 |
| small_gicp: Efficient and parallel algorithms for pointcloud registration |
9 |
| PyQMRI: An accelerated Python based Quantitative MRI toolbox |
8 |
| Phobos: A tool for creating complex robot models |
8 |
| FLAM: Fast Linear Algebra in MATLAB - Algorithms for Hierarchical Matrices |
8 |
| A GPU-Accelerated Open-Source Python Package forCalculating Powder Diffraction, Small-Angle-, and Total Scattering withthe Debye Scattering Equation |
8 |
| Metagenomic classification with KrakenUniq onlow-memory computers |
8 |
| Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification |
8 |
| SARAS: A general-purpose PDE solver for fluid dynamics |
8 |
| APCtools: Descriptive and Model-based Age-Period-CohortAnalysis |
8 |
| terrainr: An R package for creating immersive virtual environments |
8 |
| MaterialNet: A web-based graph explorer for materials science data |
8 |
| pyCeterisParibus: explaining Machine Learning models with Ceteris Paribus Profiles in Python |
8 |
| REMix: A GAMS-based framework for optimizing energysystem models |
8 |
| Distant Viewing Toolkit: A Python Package for the Analysis of Visual Culture |
8 |
| Machine Learning Validation via Rational DatasetSampling with astartes |
8 |
| prospect: an R package to link leaf optical propertieswith their chemical and structural properties with the leaf modelPROSPECT |
8 |
| txshift: Efficient estimation of the causal effects of stochastic interventions in R |
8 |
| adaptr: an R package for simulating and comparingadaptive clinical trials |
8 |
| JavaPermutationTools: A Java Library of Permutation Distance Metrics |
8 |
| easyaccess: Enhanced SQL command line interpreter for astronomical surveys |
8 |
| BCAWT: Automated tool for codon usage bias analysis for molecular evolution |
8 |
| PATATO: a Python photoacoustic tomography analysistoolkit |
8 |
| swift-emulator: A Python package for emulation ofsimulated scaling relations |
8 |
| carl: a likelihood-free inference toolbox |
8 |
| BayesPostEst: An R Package to Generate Postestimation Quantities for Bayesian MCMC Estimation |
8 |
| lidar: A Python package for delineating nested surface depressions from digital elevation data |
8 |
| SarcGraph: A Python package for analyzing thecontractile behavior of pluripotent stem cell-derivedcardiomyocytes |
8 |
| ecopath_matlab: A Matlab-based implementation of the Ecopath food web algorithm |
8 |
| singcar: Comparing single cases to small samples in R |
8 |
| elapid: Species distribution modeling tools forPython |
8 |
| Ecological Metadata as Linked Data |
8 |
| Finch: a tool adding dynamic abundance filtering to genomic MinHashing |
8 |
| Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature |
8 |
| FielDHub: A Shiny App for Design of Experiments in Life Sciences |
8 |
| argopy: A Python library for Argo ocean data analysis |
8 |
| DendroPy 5: a mature Python library for phylogeneticcomputing |
8 |
| PyArabic: A Python package for Arabic text |
8 |
| TauFactor 2: A GPU accelerated python tool formicrostructural analysis |
8 |
| Lightshow: a Python package for generatingcomputational x-ray absorption spectroscopy input files |
8 |
| icepyx: querying, obtaining, analyzing, andmanipulating ICESat-2 datasets |
8 |
| NiBetaSeries: task related correlations in fMRI |
8 |
| MyPTV: A Python Package for 3D ParticleTracking |
8 |
| HOOMD-TF: GPU-Accelerated, Online Machine Learning in the HOOMD-blue Molecular Dynamics Engine |
8 |
| SCALib: A Side-Channel Analysis Library |
8 |
| MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver |
8 |
| ordPens: An R package for Selection, Smoothing and Principal Components Analysis for Ordinal Variables |
8 |
| The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries |
8 |
| AliasFinder: A Python script to search for the true planetary frequency within radial velocity data |
8 |
| Pybotics: Python Toolbox for Robotics |
8 |
| MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks |
8 |
| flowTorch - a Python library for analysis and reduced-order modeling of fluid flows |
8 |
| s4rdm3x: A Tool Suite to Explore Code to Architecture Mapping Techniques |
8 |
| bíogo: a simple high-performance bioinformatics toolkit for the Go language |
8 |
| WODEN: A CUDA-enabled package to simulate low-frequency radio interferometric data |
8 |
| FEST-3D: Finite-volume Explicit STructured 3-Dimensional solver |
8 |
| refsplitr: Author name disambiguation, author georeferencing, and mapping of coauthorship networks with Web of Science data |
8 |
| tissueloc: Whole slide digital pathology image tissue localization |
8 |
| DearScholar: A mobile application to conduct qualitative and quantitative diary research |
8 |
| TimeSeriesClustering: An extensible framework in Julia |
8 |
| SenSARP: A pipeline to pre-process Sentinel-1 SLC data by using ESA SNAP Sentinel-1 Toolbox |
8 |
| ivadomed: A Medical Imaging Deep Learning Toolbox |
8 |
| rgugik: Search and Retrieve Spatial Data from the Polish Head Office of Geodesy and Cartography in R |
8 |
| PyCurious: A Python module for computing the Curie depth from the magnetic anomaly. |
8 |
| pointcloudset: Efficient Analysis of Large Datasets of Point Clouds Recorded Over Time |
8 |
| pytreegrav: A fast Python gravity solver |
8 |
| NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models |
8 |
| TraViA: a Traffic data Visualization and Annotation tool in Python |
8 |
| fuse: An R package for ensemble Hydrological Modelling |
8 |
| xrdfit: A Python package for fitting synchrotron X-ray diffraction spectra |
8 |
| dms-viz: Structure-informed visualizations for deepmutational scanning and other mutation-based datasets |
8 |
| SSN2: The next generation of spatial stream networkmodeling in R |
8 |
| HyperNetX: A Python package for modeling complex network data as hypergraphs |
8 |
| FuseMedML: a framework for accelerated discovery inmachine learning based biomedicine |
8 |
| EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools. |
8 |
| qicharts2: Quality Improvement Charts for R |
8 |
| infotheory: A C++/Python package for multivariate information theoretic analysis |
8 |
| MorphoPy: A python package for feature extraction of neural morphologies. |
8 |
| SmartEDA: An R Package for Automated Exploratory Data Analysis |
8 |
| A Fast Iterative Method Python package |
8 |
| bsym: A basic symmetry module |
8 |
| gospl: Global Scalable Paleo Landscape Evolution |
7 |
| individual: An R package for individual-based epidemiological models |
7 |
| lightr: import spectral data and metadata in R |
7 |
| The Dusty Evolved Star Kit (DESK): A Python package for fitting the Spectral Energy Distribution of Evolved Stars |
7 |
| OpenSpace: An open-source astrovisualization framework |
7 |
| glottospace: R package for language mapping andgeospatial analysis of linguistic and cultural data |
7 |
| MIDI.jl: Simple and intuitive handling of MIDI data. |
7 |
| COSplay: Contrast Optimized Stimulation Player |
7 |
| pygamma-agreement: Gamma \(\gamma\) measure for inter/intra-annotator agreement in Python |
7 |
| stabm: Stability Measures for Feature Selection |
7 |
| sierra-local: A lightweight standalone application for drug resistance prediction |
7 |
| basilisk: a Bioconductor package for managing Pythonenvironments |
7 |
| SIHR: a MATLAB/GNU Octave toolbox for single image highlight removal |
7 |
| optimade-python-tools: a Python library for serving and consuming materials data via OPTIMADE APIs |
7 |
| The 2DECOMP&FFT library: an update with new CPU/GPUcapabilities |
7 |
| CircuitGraph: A Python package for Boolean circuits |
7 |
| rowan: A Python package for working with quaternions |
7 |
| FAME-Io: Configuration tools for complex agent-basedsimulations |
7 |
| openEyeTrack - A high speed multi-threaded eye tracker for head-fixed applications |
7 |
| dcgp: Differentiable Cartesian Genetic Programming made easy. |
7 |
| Phylen: automatic phylogenetic reconstruction using the EggNOG database |
7 |
| SODAR Core: a Django-based framework for scientific data management and analysis web apps |
7 |
| SkyPy: A package for modelling the Universe |
7 |
| BATMAN: Statistical analysis for expensive computer codes made easy |
7 |
| malan: MAle Lineage ANalysis |
7 |
| Pymagicc: A Python wrapper for the simple climate model MAGICC |
7 |
| PyCPD: Pure NumPy Implementation of the Coherent PointDrift Algorithm |
7 |
| hddtools: Hydrological Data Discovery Tools |
7 |
| cdcam: Cambridge Digital Communications Assessment Model |
7 |
| Kamodo: A functional API for space weather models anddata |
7 |
| portalr: an R package for summarizing and using the Portal Project Data |
7 |
| BotSlayer: real-time detection of bot amplification on Twitter |
7 |
| ijtiff: An R package providing TIFF I/O for ImageJ users |
7 |
| covid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the 2019 Coronavirus Disease Pandemic |
7 |
| SpeechPy - A Library for Speech Processing and Recognition |
7 |
| Octopus Sensing: A Python library for human behaviorstudies |
7 |
| ChebTools: C++11 (and Python) tools for working with Chebyshev expansions |
7 |
| thresholdmodeling: A Python package for modeling excesses over a threshold using the Peak-Over-Threshold Method and the Generalized Pareto Distribution |
7 |
| HallThruster.jl: a Julia package for 1D Hall thrusterdischarge simulation |
7 |
| Asimov: A framework for coordinating parameterestimation workflows |
7 |
| Helper for Bézier Curves, Triangles, and Higher Order Objects |
7 |
| Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data |
7 |
| graphlayouts: Layout algorithms for networkvisualizations in R |
7 |
| Bruker2nifti: Magnetic Resonance Images converter from Bruker ParaVision to Nifti format |
7 |
| TorchGAN: A Flexible Framework for GAN Training and Evaluation |
7 |
| neotoma2: An R package to access data from the NeotomaPaleoecology Database |
7 |
| Pyrokinetics - A Python library to standardisegyrokinetic analysis |
7 |
| sigmajs: An R htmlwidget interface to the sigma.js visualization library |
7 |
| PyCUTEst: an open source Python package of optimizationtest problems |
7 |
| Scyland3D: Processing 3D landmarks |
7 |
| RCzechia: Spatial Objects of the Czech Republic |
7 |
| c-lasso - a Python package for constrained sparse and robust regression and classification |
7 |
| htmldate: A Python package to extract publication dates from web pages |
7 |
| SESAMI APP: An Accessible Interface for Surface AreaCalculation of Materials from Adsorption Isotherms |
7 |
| nomisr: Access Nomis UK Labour Market Data |
7 |
| SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia |
7 |
| SurfinPy 2.0: A Phase Diagram Generator for Surfacesand Bulk Phases |
7 |
| Plonk: Smoothed particle hydrodynamics analysis and visualization with Python |
7 |
| SMITE: Single Molecule Imaging Toolbox Extraordinaire(MATLAB) |
7 |
| chombo-discharge: An AMR code for gas dischargesimulations in complex geometries |
7 |
| timeseriesflattener: A Python package for summarizingfeatures from (medical) time series |
7 |
| pyDeltaRCM: a flexible numerical delta model |
7 |
| FIPS: An R Package for Biomathematical Modelling ofHuman Fatigue Related Impairment |
7 |
| Inscriptis - A Python-based HTML to text conversion library optimized for knowledge extraction from the Web |
7 |
| OceanSpy: A Python package to facilitate ocean model data analysis and visualization |
7 |
| btllib: A C++ library with Python interface forefficient genomic sequence processing |
7 |
| flusight: interactive visualizations for infectious disease forecasts |
7 |
| VIEWpoly: a visualization tool to integrate and exploreresults of polyploid genetic analysis |
7 |
| Kactus2: A graphical EDA tool built on the IP-XACT standard |
7 |
| SDGdetector: an R-based text mining tool forquantifying efforts toward Sustainable Development Goals |
7 |
| FASMA 2.0: A Python package for stellar parameters and chemical abundances |
7 |
| webweb: a tool for creating, displaying, and sharing interactive network visualizations on the web |
7 |
| AIBECS.jl: A tool for exploring global marine biogeochemical cycles. |
7 |
| cspy: A Python package with a collection of algorithms for the (Resource) Constrained Shortest Path problem |
7 |
| approxposterior: Approximate Posterior Distributions in Python |
7 |
| dyPolyChord: dynamic nested sampling with PolyChord |
7 |
| prysm: A Python optics module |
7 |
| Containershare: Open Source Registry to build, test, deploy with CircleCI |
7 |
| Imagedata: A Python library to handle medical imagedata in NumPy array subclass Series |
7 |
| acronym: An Automatic Reduction Pipeline for Astronomical Images |
7 |
| pytorch-widedeep: A flexible package for multimodaldeep learning |
7 |
| GHEtool: An open-source tool for borefield sizing inPython |
7 |
| LightTwinSVM: A Simple and Fast Implementation of Standard Twin Support Vector Machine Classifier |
6 |
| GTFS Segments: A Fast and Efficient Library to GenerateBus Stop Spacings |
6 |
| VAST: the Void Analysis Software Toolkit |
6 |
| Correlation: An Analysis Tool for Liquids and for Amorphous Solids |
6 |
| PyBADS: Fast and robust black-box optimization inPython |
6 |
| PyVBMC: Efficient Bayesian inference in Python |
6 |
| PyMap3D: 3-D coordinate conversions for terrestrial and geospace environments |
6 |
| QuantNBody: a Python package for quantum chemistry andphysics to build and manipulate many-body operators and wavefunctions. |
6 |
| lfda: Local Fisher Discriminant Analysis in R |
6 |
| fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI |
6 |
| Prism: Multiple spline regression with regularization, dimensionality reduction, and feature selection |
6 |
| rdefra: Interact with the UK AIR Pollution Database from DEFRA |
6 |
| OpenOA: An Open-Source Codebase For Operational Analysis of Wind Farms |
6 |
| MatchPy: Pattern Matching in Python |
6 |
| BrightEyes-MCS: a control software for multichannelscanning microscopy |
6 |
| SolvationAnalysis: A Python toolkit for understandingliquid solvation structure in classical molecular dynamicssimulations |
6 |
| CITapp - a response time-based Concealed Information Test lie detector web application |
6 |
| whampy: Python Package to Interact with, Visualize, and Analyze the Wisconsin H-Alpha Mapper - Sky Survey |
6 |
| sbp-env: A Python Package for Sampling-based Motion Planner and Samplers |
6 |
| RandomForestsGLS: An R package for Random Forests fordependent data |
6 |
| xeofs: Comprehensive EOF analysis in Python withxarray |
6 |
| OmniTrax: A deep learning-driven multi-animal trackingand pose-estimation add-on for Blender |
6 |
| Lithology: A Landlab submodule for spatially variable rock properties |
6 |
| UglyMol: a WebGL macromolecular viewer focused on the electron density |
6 |
| Geodata-Harvester: A Python package to jumpstartgeospatial data extraction and analysis |
6 |
| APECSS: A software library for cavitation bubbledynamics and acoustic emissions |
6 |
| AMAT: A Python package for rapid conceptual design of aerocapture and atmospheric Entry, Descent, and Landing (EDL) missions in a Jupyter environment |
6 |
| PhaseTypeR: an R package for phase-type distributionsin population genetics |
6 |
| bem: modeling for neutron Bragg-edge imaging |
6 |
| bcdata: An R package for searching retrieving data from the B.C. Data Catalogue |
6 |
| Singularity Registry: Open Source Registry for Singularity Images |
6 |
| mwarp1d: Manual one-dimensional data warping in Python and PyQt |
6 |
| SurvivalVolume: interactive volume threshold survival graphs |
6 |
| CSaransh : Software Suite to Study Molecular Dynamics Simulations of Collision Cascades |
6 |
| cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R |
6 |
| graphsim: An R package for simulating gene expression data from graph structures of biological pathways |
6 |
| Bedparse: feature extraction from BED files |
6 |
| signnet: An R package for analyzing signednetworks |
6 |
| tidyqpcr: Quantitative PCR analysis in thetidyverse. |
6 |
| Nuclear Morphology Analysis 2.0.0: Improved imageanalysis software for measuring nuclear shape |
6 |
| CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R |
6 |
| ParMOO: A Python library for parallel multiobjectivesimulation optimization |
6 |
| gcamfaostat: An R package to prepare, process, andsynthesize FAOSTAT data for global agroeconomic and multisector dynamicmodeling |
6 |
| BGmisc: An R Package for Extended Behavior GeneticsAnalysis |
6 |
| pulse: A python package based on FEniCS for solving problems in cardiac mechanics |
6 |
| PAS: a Python Anesthesia Simulator for drugcontrol |
6 |
| hoggorm: a python library for explorative multivariate statistics |
6 |
| DAPPER: Data Assimilation with Python: a Package forExperimental Research |
6 |
| Fast and flexible simulation and parameter estimationfor synthetic biology using bioscrape |
6 |
| GENRE (GPU Elastic-Net REgression): A CUDA-Accelerated Package for Massively Parallel Linear Regression with Elastic-Net Regularization |
6 |
| shinyssdtools: A web application for fitting Species Sensitivity Distributions (SSDs) |
6 |
| IDESolver: a general purpose integro-differential equation solver |
6 |
| Spectral Connectivity: a python package for computingmultitaper spectral estimates and frequency-domain brain connectivitymeasures on the CPU and GPU |
6 |
| Discrete Laplace mixture model with applications in forensic genetics |
6 |
| CoReCon: an open, community-powered collection ofReionization constraints |
6 |
| AltamISA: a Python API for ISA-Tab files |
6 |
| Vizumap: an R package for visualising uncertainty in spatial data |
6 |
| egtplot: A Python Package for Three-Strategy Evolutionary Games |
6 |
| Visualizing alpha-helical peptides in R with helixvis |
6 |
| GNS: A generalizable Graph Neural Network-basedsimulator for particulate and fluid modeling |
6 |
| TensorFlow.jl: An Idiomatic Julia Front End for TensorFlow |
6 |
| plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM) |
6 |
| Archeofrag: an R package for Refitting and SpatialAnalysis in Archaeology |
6 |
| UM-Bridge: Uncertainty quantification and modelingbridge |
6 |
| PyBullet Industrial: A process-aware robotsimulation |
6 |
| [dfitspy: a dfits |
fitsort implementation in python](https://doi.org/10.21105/joss.01249) |
| khmer release v2.1: software for biological sequence analysis |
6 |
| SpeciesEvolver: A Landlab component to evolve life in simulated landscapes |
6 |
| covtobed: a simple and fast tool to extract coverage tracks from BAM files |
6 |
| FIRESONG: A python package to simulate populations of extragalactic neutrino sources |
6 |
| The hhi Package: Streamlined Calculation and Visualization of Herfindahl-Hirschman Index Scores |
6 |
| libecpint: A C++ library for the efficient evaluation of integrals over effective core potentials |
6 |
| Spafe: Simplified python audio featuresextraction |
6 |
| corporaexplorer: An R package for dynamic exploration of text collections |
6 |
| Basicsums: A Python package for computing structural sums and the effective conductivity of random composites |
6 |
| pyPhenology: A python framework for plant phenology modelling |
6 |
| ReproZip: The Reproducibility Packer |
6 |
| CRATE: A Python package to perform fast materialsimulations |
6 |
| Virtual Scanner: MRI on a Browser |
6 |
| besos: Building and Energy Simulation, Optimization and Surrogate Modelling |
6 |
| Pylinac: Image analysis for routine quality assurancein radiotherapy |
6 |
| Open-Source Hypothalamic-ForniX (OSHy-X) Atlases andSegmentation Tool for 3T and 7T |
6 |
| AirTrafficSim: An open-source web-based air trafficsimulation platform. |
6 |
| RENT: A Python Package for Repeated Elastic Net Feature Selection |
6 |
| PowerAPI: A Python framework for buildingsoftware-defined power meters |
6 |
| qualtRics: retrieve survey data using the Qualtrics API |
6 |
| BiRank: Fast and Flexible Ranking on Bipartite Networks with R and Python |
6 |
| Torque-limited simple pendulum: A toolkit for gettingfamiliar with control algorithms in underactuated robotics |
6 |
| univariateML: An R package for maximum likelihood estimation of univariate densities |
6 |
| einprot: flexible, easy-to-use, reproducible workflowsfor statistical analysis of quantitative proteomics data |
6 |
| treex: a Python package for manipulating rooted trees |
6 |
| ARDL: An R package for the analysis of level relationships |
6 |
| TimeseriesSurrogates.jl: a Julia package for generatingsurrogate data |
6 |
| restez: Create and Query a Local Copy of GenBank in R |
6 |
| goFlux: A user-friendly way to calculate GHG fluxesyourself, regardless of user experience |
6 |
| dfba: Software for efficient simulation of dynamic flux-balance analysis models in Python |
6 |
| stemflow: A Python Package for Adaptive Spatio-TemporalExploratory Model |
6 |
| LCIA Formatter |
6 |
| Mobile Gaze Mapping: A Python package for mapping mobile gaze data to a fixed target stimulus |
6 |
| simChef: High-quality data science simulations inR |
6 |
| RAMP: stochastic simulation of user-driven energydemand time series |
6 |
| GraphNeT: Graph neural networks for neutrino telescopeevent reconstruction |
6 |
| pyodesys: Straightforward numerical integration of ODE systems from Python |
6 |
| popsynth: A generic astrophysical population synthesis framework |
5 |
| PyUoI: The Union of Intersections Framework in Python |
5 |
| dyntapy: dynamic and static traffic assignment in Python |
5 |
| CHAMP is a HPC Access and Metadata Portal |
5 |
| py-opc: operate the Alphasense OPC-N2 from a raspberry pi or other popular microcontrollers/microcomputers |
5 |
| CEGO: C++11 Evolutionary Global Optimization |
5 |
| SphericalScattering: A Julia Package forElectromagnetic Scattering from Spherical Objects |
5 |
| SimilaritySearch.jl: Autotuned nearest neighbor indexesfor Julia |
5 |
| PyLithics: A Python package for stone tool analysis |
5 |
| CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures |
5 |
| 21cmSense v2: A modular, open-source 21 cm sensitivitycalculator |
5 |
| hstrat: a Python Package for phylogenetic inference ondistributed digital evolution populations |
5 |
| Regl-Scatterplot: A Scalable InteractiveJavaScript-based Scatter Plot Library |
5 |
| Ngesh: a Python library for synthetic phylogenetic data |
5 |
| CoastSeg: an accessible and extendable hub forsatellite-derived-shoreline (SDS) detection and mapping |
5 |
| DynamicalBilliards.jl: An easy-to-use, modular and extendable Julia package for Dynamical Billiard systems in two dimensions. |
5 |
| ukpopulation: unified national and subnational population estimates and projections, including variants |
5 |
| cerf: A Python package to evaluate the feasibility and costs of power plant siting for alternative futures |
5 |
| simcardems: A FEniCS-based cardiac electro-mechanicssolver |
5 |
| Generating CodeMeta Metadata for R Packages |
5 |
| PolaronMobility.jl: Implementation of the Feynman variational polaron model |
5 |
| geostan: An R package for Bayesian spatialanalysis |
5 |
| MARTINI: Mock Array Radio Telescope Interferometry ofthe Neutral ISM |
5 |
| Pyccel: a Python-to-X transpiler for scientifichigh-performance computing |
5 |
| GemGIS - Spatial Data Processing forGeomodeling |
5 |
| Maelstrom: A Python package for identifying companions to pulsating stars from their light travel time variations |
5 |
| predictNMB: An R package to estimate if or when aclinical prediction model is worthwhile |
5 |
| SIRUS.jl: Interpretable Machine Learning via RuleExtraction |
5 |
| spiro: An R package for analyzing data fromcardiopulmonary exercise testing |
5 |
| HiddenMarkovModels.jl: generic, fast and reliable statespace modeling |
5 |
| SelfEEG: A Python library for Self-Supervised Learningin Electroencephalography |
5 |
| ViMMS 2.0: A framework to develop, test and optimisefragmentation strategies in LC-MS metabolomics |
5 |
| JetNet: A Python package for accessing open datasetsand benchmarking machine learning methods in high energy physics |
5 |
| virtualNicheR: generating virtual fundamental and realised niches for use in virtual ecology experiments |
5 |
| Clustergram: Visualization and diagnostics for clusteranalysis |
5 |
| Gillespie.jl: Stochastic Simulation Algorithm in Julia |
5 |
| yadg: yet another datagram |
5 |
| eyecite: A tool for parsing legal citations |
5 |
| pyro: a framework for hydrodynamics explorations and prototyping |
5 |
| Simmate: a framework for materials science |
5 |
| hei: Calculate Healthy Eating Index (HEI) Scores |
5 |
| fishStan: Hierarchical Bayesian models forfisheries |
5 |
| RT-utils: A Minimal Python Library for RT-struct Manipulation |
5 |
| pfla: A Python Package for Dental Facial Analysis using Computer Vision and Statistical Shape Analysis |
5 |
| xrnet: Hierarchical Regularized Regression to Incorporate External Data |
5 |
| alv: a console-based viewer for molecular sequence alignments |
5 |
| LAS: an integrated language analysis tool for multiple languages |
5 |
| The country converter coco - a Python package for converting country names between different classification schemes |
5 |
| KMC_Lattice v2.0: An Object-Oriented C Library for Custom Kinetic Monte Carlo Simulations |
5 |
| mutyper: assigning and summarizing mutation types foranalyzing germline mutation spectra |
5 |
| Triumvirate: A Python/C++ package for three-pointclustering measurements |
5 |
| RepnDecomp: A GAP package for decomposing linear representations of finite groups |
5 |
| Pakman: a modular, efficient and portable tool for approximate Bayesian inference |
5 |
| ThermoFun: A C++/Python library for computing standardthermodynamic properties of substances and reactions across wide rangesof temperatures and pressures |
5 |
| AixCaliBuHA: Automated calibration of building and HVACsystems |
5 |
| GNU Data Language 1.0: a free/libre and open-sourcedrop-in replacement for IDL/PV-WAVE |
5 |
| Temporalis: an open source software for dynamic LCA |
5 |
| secuTrialR: Seamless interaction with clinical trial databases in R |
5 |
| LenslessPiCam: A Hardware and Software Platform forLensless Computational Imaging with a Raspberry Pi |
5 |
| MetaWards: A flexible metapopulation framework for modelling disease spread |
5 |
| Crowsetta: A Python tool to work with any format forannotating animal vocalizations and bioacoustics data. |
5 |
| The MarINvaders Toolkit |
5 |
| LightLogR: Reproducible analysis of personal light exposure data |
5 |
| shar: An R package to analyze species-habitat associations using point pattern analysis |
5 |
| BioProv - A provenance library for bioinformatics workflows |
5 |
| proEQUIB: IDL Library for Plasma Diagnostics and Abundance Analysis |
5 |
| STEDY: Software for TEnsegrity DYnamics |
5 |
| Sentiment Analysis of Twitter Data (saotd) |
5 |
| RAFF.jl: Robust Algebraic Fitting Function in Julia |
5 |
| PROFFASTpylot: Running PROFFAST with Python |
5 |
| MultichannelGPR: A MATLAB tool for Ground PenetratingRadar data processing |
5 |
| mst_clustering: Clustering via Euclidean Minimum Spanning Trees |
5 |
| RK-Opt: A package for the design of numerical ODE solvers |
5 |
| pyBEMT: An implementation of the Blade Element Momentum Theory in Python |
5 |
| Autosubmit GUI: A Javascript-based Graphical User Interface to Monitor Experiments Workflow Execution |
5 |
| DARE Platform: a Developer-Friendly and Self-Optimising Workflows-as-a-Service Framework for e-Science on the Cloud |
5 |
| PatchView: A Python Package for Patch-clamp DataAnalysis and Visualization |
5 |
| directChillFoam: an OpenFOAM application fordirect-chill casting |
5 |
| Riroriro: Simulating gravitational waves and evaluating their detectability in Python |
5 |
| Noisyopt: A Python library for optimizing noisy functions. |
5 |
| aesop: ARC Echelle Spectroscopic Observation Pipeline |
5 |
| Powering single-cell analyses in the browser withWebAssembly |
5 |
| Instrbuilder: A Python package for electrical instrument control |
5 |
| HRDS: A Python package for hierarchical raster datasets |
5 |
| spaghetti: spatial network analysis in PySAL |
5 |
| UnROOT: an I/O library for the CERN ROOT file formatwritten in Julia |
5 |
| eixport: An R package to export emissions to atmospheric models |
5 |
| Multi-view-AE: A Python package for multi-viewautoencoder models |
5 |
| PropPy – Correlated random walk propagation of cosmicrays in magnetic turbulence |
5 |
| JOAN: a framework for human-automated vehicleinteraction experiments in a virtual reality driving simulator |
5 |
| Persistable: persistent and stable clustering |
5 |
| tbeptools: An R package for synthesizing estuarine data for environmental research |
5 |
| TrackerControl: Transparency and Choice around AppTracking |
5 |
| gofcat: An R package for goodness-of-fit of categoricalresponse models |
5 |
| (py)oscode: fast solutions of oscillatory ODEs |
5 |
| rtimicropem: an R package supporting the analysis of RTI MicroPEM output files |
5 |
| sdmbench: R package for benchmarking species distribution models |
5 |
| Nostril: A nonsense string evaluator written in Python |
5 |
| tesliper: a theoretical spectroscopist’s littlehelper |
5 |
| QXTools: A Julia framework for distributed quantum circuit simulation |
5 |
| DeepRank2: Mining 3D Protein Structures with GeometricDeep Learning |
5 |
| PyVOLCANS: A Python package to flexibly explore similarities and differences between volcanic systems |
5 |
| WordTokenizers.jl: Basic tools for tokenizing natural language in Julia |
5 |
| DynaMo: Dynamic Body Shape and Motion Capture with Intel RealSense Cameras |
5 |
| Quail: A Python toolbox for analyzing and plotting free recall data |
5 |
| PyTeNet: A concise Python implementation of quantum tensor network algorithms |
5 |
| OrpailleCC: a Library for Data Stream Analysis on Embedded Systems |
5 |
| epipack: An infectious disease modeling package for Python |
5 |
| sboxgates: A program for finding low gate count implementations of S-boxes |
5 |
| NGSTrefftz: Add-on to NGSolve for Trefftzmethods |
5 |
| ELDAM: A Python software for Life Cycle Inventory data management |
5 |
| hplc-py: A Python Utility For Rapid Quantification ofComplex Chemical Chromatograms |
5 |
| PyMPDATA v1: Numba-accelerated implementation of MPDATAwith examples in Python, Julia and Matlab |
5 |
| Suppdata: Downloading Supplementary Data from Published Manuscripts |
5 |
| WRF-CMake: integrating CMake support into the Advanced Research WRF (ARW) modelling system |
5 |
| causal-curve: A Python Causal Inference Package to Estimate Causal Dose-Response Curves |
5 |
| Lcopt - An interactive tool for creating fully parameterised Life Cycle Assessment (LCA) foreground models |
5 |
| PyCHAM: CHemistry with Aerosol Microphysics in Python |
5 |
| Exonoodle: Synthetic time-series spectra generator for transiting exoplanets |
5 |
| CWInPy: A Python package for inference with continuousgravitational-wave signals from pulsars |
5 |
| Biosiglive: an Open-Source Python Package for Real-timeBiosignal Processing |
5 |
| fmcmc: A friendly MCMC framework |
5 |
| EnergyModelsX: Flexible Energy Systems Modelling withMultiple Dispatch |
5 |
| RcppCNPy: Read-Write Support for NumPy Files in R |
5 |
| RADWave: Python code for ocean surface wave analysis by satellite radar altimeter |
5 |
| papaya2: 2D Irreducible Minkowski Tensor computation |
5 |
| bbsAssistant: An R package for downloading and handling data and information from the North American Breeding Bird Survey |
5 |
| Launcher: A simple tool for executing high throughput computing workloads |
5 |
| swisslandstats-geopy: Python tools for the land statistics datasets from the Swiss Federal Statistical Office |
5 |
| kallisto: A command-line interface to simplify computational modelling and the generation of atomic features |
5 |
| squishyplanet: modeling transits of non-sphericalexoplanets in JAX |
5 |
| Brainchop: In-browser MRI volumetric segmentation andrendering |
5 |
| Radial Interstices Enable Speedy Low-volume Imaging |
5 |
| Mandyoc: A finite element code to simulatethermochemical convection in parallel |
5 |
| tukey_hsd: An Accurate Implementation of the TukeyHonestly Significant Difference Test in Python |
5 |
| Tashaphyne: A Python package for Arabic LightStemming |
5 |
| pyemgpipeline: A Python package for electromyographyprocessing |
5 |
| dataquieR 2: An updated R package for FAIR data qualityassessments in observational studies and electronic health recorddata |
5 |
| pathways: life cycle assessment of energy transitionscenarios |
5 |
| Nempy: A Python package for modelling the Australian National Electricity Market dispatch procedure |
4 |
| BeeNestABM: An open-source agent-based model of spatiotemporal distribution of bumblebees in nests |
4 |
| ResumableFunctions: C# sharp style generators for Julia. |
4 |
| Foundry-ML - Software and Services to Simplify Accessto Machine Learning Datasets in Materials Science |
4 |
| Panako: a scalable audio search system |
4 |
| WrightTools: a Python package for multidimensional spectroscopy |
4 |
| APackOfTheClones: Visualization of clonal expansionwith circle packing |
4 |
| Rescal-snow: Simulating snow dunes with cellular automata |
4 |
| archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes |
4 |
| mimosa: A Modern Graphical User Interface for 2-level Mixed Models |
4 |
| CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database |
4 |
| NodePy: A package for the analysis of numerical ODE solvers |
4 |
| vcftoolz: a Python package for comparing and evaluating Variant Call Format files. |
4 |
| eSCAPE: parallel global-scale landscape evolution model |
4 |
| A Python package for homogenization procedures in fiberreinforced polymers |
4 |
| MAHOS: Measurement Automation Handling andOrchestration System |
4 |
| gmm_diag and gmm_full: C++ classes for multi-threaded Gaussian mixture models and Expectation-Maximisation |
4 |
| Automated Sleep Stage Scoring Using k-Nearest Neighbors Classifier |
4 |
| umami: A Python package for Earth surface dynamics objective function construction |
4 |
| ysoisochrone: A Python package to estimate masses and ages for YSOs |
4 |
| c212: An R Package for the Detection of Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) |
4 |
| Eniric: Extended NIR Information Content |
4 |
| Aronnax: An idealised isopycnal ocean model |
4 |
| spectrapepper: A Python toolbox for advanced analysis of spectroscopic data for materials and devices. |
4 |
| libqcpp: A C++14 sequence quality control library |
4 |
| Integrated hydrologic model development andpostprocessing for GSFLOW using pyGSFLOW |
4 |
| FrESCO: Framework for Exploring Scalable ComputationalOncology |
4 |
| Frackit: a framework for stochastic fracture network generation and analysis |
4 |
| filesstrings: An R package for file and string manipulation |
4 |
| DTCC Builder: A mesh generator for automatic,efficient, and robust mesh generation for large-scale city modeling andsimulation |
4 |
| modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions |
4 |
| KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio |
4 |
| Python Sorted Containers |
4 |
| SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data |
4 |
| DMT-core: A Python Toolkit for Semiconductor DeviceEngineers |
4 |
| Corekaburra: pan-genome post-processing using core genesynteny |
4 |
| Universal Numbers Library: Multi-format VariablePrecision Arithmetic Library |
4 |
| qujax: Simulating quantum circuits with JAX |
4 |
| Cellocity: A Python package for analysis of confluent cell layer dynamics |
4 |
| PiSCAT: A Python Package for Interferometric ScatteringMicroscopy |
4 |
| PySwarming: a research toolkit for SwarmRobotics |
4 |
| PYroMat: A Python package for thermodynamicproperties |
4 |
| pymnet: A Python Library for MultilayerNetworks |
4 |
| AncesTrim - a tool for trimming complex pedigrees |
4 |
| lattice_mc: A Python Lattice-Gas Monte Carlo Module |
4 |
| AutoClassWrapper: a Python wrapper for AutoClass C classification |
4 |
| nctoolkit: A Python package for netCDF analysis andpost-processing |
4 |
| TextWiller: Collection of functions for text mining, specially devoted to the Italian language |
4 |
| ERF: Energy Research and Forecasting |
4 |
| BifacialSimu: Holistic Simulation of large-scaleBifacial Photovoltaic Systems |
4 |
| PyKoopman: A Python Package for Data-DrivenApproximation of the Koopman Operator |
4 |
| mcMST: A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem |
4 |
| sandpyper: A Python package for UAV-SfM beach volumetric and behavioural analysis |
4 |
| OpenCADD-KLIFS: A Python package to fetch kinase data from the KLIFS database |
4 |
| deepCR: Cosmic Ray Rejection with Deep Learning |
4 |
| phasespace: n-body phase space generation in Python |
4 |
| nse: Computation of Numerical Standard Errors in R |
4 |
| HydDown: A Python package for calculation of hydrogen (or other gas) pressure vessel filling and discharge |
4 |
| Nanomesh: A Python workflow tool for generating meshesfrom image data |
4 |
| excitingtools: An exciting Workflow Tool |
4 |
| Correlation Trait Loci (CTL) mapping: phenotype network inference subject to genotype |
4 |
| model-traits: Model attribute definitions for scientific simulations in C++ |
4 |
| Akmedoids R package for generating directionally-homogeneous clusters of longitudinal data sets |
4 |
| resampy: efficient sample rate conversion in Python |
4 |
| UncertainSCI: A Python Package for NoninvasiveParametric Uncertainty Quantification of Simulation Pipelines |
4 |
| h3ppy: An open-source Python package for modelling and fitting H_3^+ spectra |
4 |
| Building, Importing, and Exporting GEXF Graph Files with rgexf |
4 |
| cottoncandy: scientific python package for easy cloud storage |
4 |
| EFAshiny: An User-Friendly Shiny Application for Exploratory Factor Analysis |
4 |
| CLEAVING: a LAMMPS package to compute surface freeenergies |
4 |
| Ambit – A FEniCS-based cardiovascular multi-physicssolver |
4 |
| ADI.jl: A Julia Package for High-Contrast Imaging |
4 |
| CapacityExpansion: A capacity expansion modeling framework in Julia |
4 |
| bíogo/hts: high throughput sequence handling for the Go language |
4 |
| Netgraph: Publication-quality Network Visualisations in Python |
4 |
| coalitions: Coalition probabilities in multi-party democracies |
4 |
| autoplotly: An R package for automatic generation of interactive visualizations for statistical results |
4 |
| AtomNeb: IDL Library for Atomic Data of Ionized Nebulae |
4 |
| Catalyst: a Python JIT compiler for auto-differentiablehybrid quantum programs |
4 |
| LDDS: Python package for computing and visualizing Lagrangian Descriptors for Dynamical Systems |
4 |
| PlanktonIndividuals.jl: A GPU supportedindividual-based phytoplankton life cycle model |
4 |
| MembraneAnalysis.jl: A Julia package for analyzingmolecular dynamics simulations of lipid membranes |
4 |
| PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView |
4 |
| MPIFiles.jl: A Julia Package for Magnetic Particle Imaging Files |
4 |
| ndsplines: A Python Library for Tensor-Product B-Splines of Arbitrary Dimension |
4 |
| profileR: An R package for profile analysis |
4 |
| AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library |
4 |
| 3D ultrasound file reading and coordinate transformations |
4 |
| CellPyLib: A Python Library for working with Cellular Automata |
4 |
| Museo ToolBox: A Python library for remote sensing including a new way to handle rasters. |
4 |
| TessPy: a python package for geographicaltessellation |
4 |
| Scarplet: A Python package for topographic template matching and diffusion dating |
4 |
| BayesianNetwork: Interactive Bayesian Network Modeling and Analysis |
4 |
| text2map: R Tools for Text Matrices |
4 |
| perccalc: An R package for estimating percentiles from categorical variables |
4 |
| SeismicMesh: Triangular meshing for seismology |
4 |
| MetObs - a Python toolkit for using non-traditionalmeteorological observations |
4 |
| MIRP: A Python package for standardisedradiomics |
4 |
| PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python |
4 |
| SBMLtoODEpy: A software program for converting SBML models into ODE models in Python |
4 |
| UPOsHam: A Python package for computing unstable periodic orbits in two-degree-of-freedom Hamiltonian systems |
4 |
| EspressoDB: A scientific database for managing high-performance computing workflows |
4 |
| NuclearToolkit.jl: A Julia package for nuclearstructure calculations |
4 |
| Pyoints: A Python package for point cloud, voxel and raster processing. |
4 |
| Pyrgg: Python Random Graph Generator |
4 |
| SampleDB: A sample and measurement metadata database |
4 |
| UTDEventData: An R package to access political event data |
4 |
| mxnorm: An R Package to Normalize Multiplexed ImagingData |
4 |
| GRDzhadzha: A code for evolving relativistic matter onanalytic metric backgrounds |
4 |
| VlaPy: A Python package for Eulerian Vlasov-Poisson-Fokker-Planck Simulations |
4 |
| uDALES: large-eddy-simulation software for urban flow, dispersion, and microclimate modelling |
4 |
| Bayesian X-ray Analysis (BXA) v4.0 |
4 |
| Enhanced software and platform for the Town Energy Balance (TEB) model |
4 |
| New developments in PySDM and PySDM-examples v2:collisional breakup, immersion freezing, dry aerosol initialization, andadaptive time-stepping |
4 |
| Phonetic Algorithms in R |
4 |
| PCRedux: A Quantitative PCR Machine LearningToolkit |
4 |
| HofstadterTools: A Python package for analyzing theHofstadter model |
4 |
| helios: An R package to process heating and coolingdegrees for GCAM |
4 |
| hdlib: A Python library for designing Vector-SymbolicArchitectures |
4 |
| CoralP: Flexible visualization of the human phosphatome |
4 |
| bikedata |
4 |
| Stingray 2: A fast and modern Python library forspectral timing |
4 |
| grapherator: A Modular Multi-Step Graph Generator |
4 |
| GRFolres: A code for modified gravity simulations instrong gravity |
4 |
| partition: A fast and flexible framework for data reduction in R |
4 |
| Baargin: a Nextflow workflow for the automatic analysisof bacterial genomics data with a focus on AntimicrobialResistance |
4 |
| ProgPy: Python Packages for Prognostics and HealthManagement of Engineering Systems |
4 |
| Melissa: coordinating large-scale ensemble runs fordeep learning and sensitivity analyses |
4 |
| pyscreener: A Python Wrapper for Computational DockingSoftware |
4 |
| SPyCi-PDB: A modular command-line interface forback-calculating experimental datatypes of protein structures. |
4 |
| ObsPlus: A Pandas-centric ObsPy expansion pack |
4 |
| IGRINS RV: A Python Package for Precision Radial Velocities with Near-Infrared Spectra |
4 |
| SMART: Spatial Modeling Algorithms for Reactions andTransport |
4 |
| IPART: A Python Package for Image-Processing based Atmospheric River Tracking |
4 |
| Generating fragment density plots in R/Bioconductor with VplotR |
4 |
| DUGseis: A Python package for real-time andpost-processing of picoseismicity |
4 |
| CaPS: Casimir Effect in the Plane-Sphere Geometry |
4 |
| CancerSim: A Cancer Simulation Package for Python 3 |
4 |
| stacomiR : a common tool for monitoring fish migration |
4 |
| SGMCMCJax: a lightweight JAX library for stochasticgradient Markov chain Monte Carlo algorithms |
4 |
| CBX: Python and Julia Packages for Consensus-BasedInteracting Particle Methods |
4 |
| Mold: a LAMMPS package to compute interfacial freeenergies and nucleation rates |
4 |
| Tidytacos: An R package for analyses on taxonomic composition of microbial communities |
4 |
| textnets: A Python package for text analysis with networks |
4 |
| OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases. |
4 |
| EDP: a program for projecting electron densities fromVASP onto planes |
4 |
| mTower: Trusted Execution Environment for MCU-based devices |
4 |
| Stokesian Dynamics in Python |
4 |
| FIGARO: hierarchical non-parametric inference forpopulation studies |
4 |
| OPTIMUS: A Multidimensional Global Optimization Package |
4 |
| QComms QKD Software Toolkit |
4 |
| Collaborative Container Modules with Singularity Registry HPC |
4 |
| Heta compiler: a software tool for the development of large-scale QSP models and compilation into simulation formats |
4 |
| rabpro: global watershed boundaries, river elevationprofiles, and catchment statistics |
4 |
| netrankr: An R package for total, partial, andprobabilistic rankings in networks |
4 |
| RCaNmodel: An R package for Chance and Necessitymodelling |
4 |
| ambrosia: An R package for calculating and analyzing food demand that is responsive to changing incomes and prices |
4 |
| SBArchOpt: Surrogate-Based ArchitectureOptimization |
4 |
| tpcp: Tiny Pipelines for Complex Problems - A set offramework independent helpers for algorithms development andevaluation |
4 |
| ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran |
4 |
| TLViz: Visualising and analysing tensor decompositionmodels with Python |
4 |
| Annotation Sniffer: A tool to Extract Code Annotations Metrics |
4 |
| Recan: Python tool for analysis of recombination events in viral genomes |
4 |
| SPICY: a Python toolbox for meshless assimilation from image velocimetry using radial basis functions |
4 |
| GaussianRandomFields.jl: A Julia package to generateand sample from Gaussian random fields |
4 |
| vSmartMOM.jl: an Open-Source Julia Package forAtmospheric Radiative Transfer and Remote Sensing Tools |
4 |
| simode: R Package for Statistical Inference of Ordinary Differential Equations using Separable Integral-Matching |
4 |
| fibergen: An introductory tool for FFT-based material homogenization |
4 |
| toqito – Theory of quantum information toolkit: A Python package for studying quantum information |
3 |
| hebbRNN: A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks |
3 |
| VCFPy: a Python 3 library with good support for both reading and writing VCF |
3 |
| Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models |
3 |
| Sit2StandPy: An Open-Source Python Package for Detecting and Quantifying Sit-to-Stand Transitions Using an Accelerometer on the Lower Back |
3 |
| ETHOS.FINE: A Framework for Integrated Energy System Assessment |
3 |
| MOAFS: A Massive Online Analysis library for feature selection in data streams |
3 |
| f3dasm: Framework for Data-Driven Design and Analysisof Structures and Materials |
3 |
| REvoSim v3: A fast evolutionary simulation tool withecological processes |
3 |
| VTUFileHandler: A VTU library in the Julia languagethat implements an algebra for basic mathematical operations on VTUdata |
3 |
| scikit-hubness: Hubness Reduction and Approximate Neighbor Search |
3 |
| pySRURGS - a python package for symbolic regression by uniform random global search |
3 |
| Dune-MMesh: The Dune Grid Module for MovingInterfaces |
3 |
| Caustics: A Python Package for Accelerated StrongGravitational Lensing Simulations |
3 |
| gollum: An intuitive programmatic and visual interfacefor precomputed synthetic spectral model grids |
3 |
| GXBeam: A Pure Julia Implementation of GeometricallyExact Beam Theory |
3 |
| mei-friend: An Interactive Web-based Editor for DigitalMusic Encodings |
3 |
| mmappickle: Python 3 module to store memory-mapped numpy array in pickle format |
3 |
| obscura: A modular C++ tool and library for the direct detection of (sub-GeV) dark matter via nuclear and electron recoils |
3 |
| riskclustr: Functions to Study Etiologic Heterogeneity |
3 |
| shoredate: An R package for shoreline dating coastalStone Age sites |
3 |
| Systems Neuro Browser (SNUB) |
3 |
| Ocellaris: a DG FEM solver for free-surface flows |
3 |
| PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics |
3 |
| cellanneal: A user-friendly deconvolution software fortranscriptomics data |
3 |
| BasicTools: a numerical simulation toolbox |
3 |
| Eyestream: An Open WebSocket-based Middleware for Serializing and Streaming Eye Tracker Event Data from Gazepoint GP3 HD Research Hardware |
3 |
| Spelunker: A quick-look Python pipeline for JWST NIRISSFGS Guide Star Data |
3 |
| libEnsemble: A complete Python toolkit for dynamicensembles of calculations |
3 |
| PourPy - A python package to generate potential-pHdiagrams |
3 |
| GFF3toEMBL: Preparing annotated assemblies for submission to EMBL |
3 |
| Audiometry: A model-view-viewmodel (MVVM) application framework for hearing impairment diagnosis |
3 |
| PyThia: A Python package for Uncertainty Quantificationbased on non-intrusive polynomial chaos expansions |
3 |
| sbi reloaded: a toolkit for simulation-based inference workflows |
3 |
| samplics: a Python Package for selecting, weighting and analyzing data from complex sampling designs. |
3 |
| Binette: a fast and accurate bin refinement tool toconstruct high quality Metagenome Assembled Genomes. |
3 |
| OpenMD: A parallel molecular dynamics engine forcomplex systems and interfaces |
3 |
| Histogram-weighted Networks for Feature Extraction, Connectivity and Advanced Analysis in Neuroscience |
3 |
| scores: A Python package for verifying and evaluating models and predictions with xarray |
3 |
| measr: Bayesian psychometric measurement usingStan |
3 |
| Swalbe.jl: A lattice Boltzmann solver for thin filmhydrodynamics |
3 |
| MolPainter: A Tool for Painting and Solvating LayeredMolecular Systems |
3 |
| yam: Yet another monitoring tool using correlations ofambient noise |
3 |
| kep_solver: A Python package for kidney exchangeprogramme exploration |
3 |
| NLSE: A Python package to solve the nonlinearSchrödinger equation |
3 |
| Metatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturation |
3 |
| hp: A Scalable MPI/OpenMP hp-Adaptive FiniteElement Software Library for Complex Multiphysics Applications |
3 |
| UnlockNN: Uncertainty quantification for neural networkmodels of chemical systems |
3 |
| Monte Carlo / Dynamic Code (MC/DC): An acceleratedPython package for fully transient neutron transport and rapid methodsdevelopment |
3 |
| Mangal.jl and EcologicalNetworks.jl: Two complementary packages for analyzing ecological networks in Julia |
3 |
| G³M-f a global gradient-based groundwater modelling framwork |
3 |
| sknet: A Python framework for Machine Learning in Complex Networks |
3 |
| fastSF: A parallel code for computing the structure functions of turbulence |
3 |
| Pycashier: cash in on DNA barcode tags |
3 |
| PyEI: A Python package for ecological inference |
3 |
| ModeCouplingTheory.jl: A solver formode-coupling-theory-like integro-differential equations |
3 |
| BayesO: A Bayesian optimization framework inPython |
3 |
| fellingdater: a toolkit to estimate, report and combinefelling dates derived from historical tree-ring series. |
3 |
| The vtreat R package: a statistically sound data processor for predictive modeling |
3 |
| DL_Track_US: a python package to analyse muscleultrasonography images |
3 |
| PyEscape: A narrow escape problem simulator package for Python |
3 |
| Astronomical échelle spectroscopy data analysis withmuler |
3 |
| Pyra: Automated EM27/SUN Greenhouse Gas MeasurementSoftware |
3 |
| DistributedSparseGrids.jl: A Julia library implementingan Adaptive Sparse Grid collocation method |
3 |
| Artery.FE: An implementation of the 1D blood flow equations in FEniCS |
3 |
| UralicNLP: An NLP Library for Uralic Languages |
3 |
| Groupyr: Sparse Group Lasso in Python |
3 |
| CheSweet: An application to predict glycan’s chemicals shifts |
3 |
| opty: Software for trajectory optimization and parameter identification using direct collocation |
3 |
| Genotify: Fast, lightweight gene lookup and summarization |
3 |
| Text detection in screen images with a Convolutional Neural Network |
3 |
| ronswanson: Building Table Models for 3ML |
3 |
| Akantu: an HPC finite-element library for contact anddynamic fracture simulations |
3 |
| MODULO: A Python toolbox for data-driven modaldecomposition |
3 |
| Rdataretriever: R Interface to the Data Retriever |
3 |
| pd-parser: A tool for Matching Photodiode Deflection Events to Time-Stamped Events |
3 |
| niacin: A Python package for text data enrichment |
3 |
| pyPLNmodels: A Python package to analyze multivariatehigh-dimensional count data |
3 |
| lys: interactive multi-dimensional data analysis andvisualization platform |
3 |
| Council Data Project: Software for Municipal DataCollection, Analysis, and Publication |
3 |
| The MOOSE geochemistry module |
3 |
| HOODESolver.jl: A Julia package for highly oscillatory problems |
3 |
| Visualizing genome synteny with xmatchview |
3 |
| Science Capsule - Capturing the Data Life Cycle |
3 |
| ESVM: an open-source finite volume Electrostatic Vlasov-Maxwell code |
3 |
| Web-based text anonymization with Node.js: Introducing NETANOS (Named entity-based Text Anonymization for Open Science) |
3 |
| RESOURCECODE: A Python package for statistical analysisof sea-state hindcast data |
3 |
| InvertibleNetworks.jl: A Julia package for scalablenormalizing flows |
3 |
| coder: An R package for code-based item classification and categorization |
3 |
| Eir: A Python Package for Epidemic Simulation |
3 |
| Pycapacity: a real-time task-space capacity calculationpackage for robotics and biomechanics |
3 |
| NEMSEER: A Python package for downloading and handlinghistorical National Electricity Market forecast data produced by theAustralian Energy Market Operator |
3 |
| Magphi: Sequence extraction tool from FASTA and GFF3files using seed pairs |
3 |
| msmhelper: A Python package for Markov state modelingof protein dynamics |
3 |
| PyBioPAX: biological pathway exchange in Python |
3 |
| automata: A Python package for simulating and manipulating automata |
3 |
| rigr: Regression, Inference, and General Data AnalysisTools in R |
3 |
| The Kestrel software for simulations of morphodynamicEarth-surface flows |
3 |
| TAXPASTA: TAXonomic Profile Aggregation andSTAndardisation |
3 |
| Mallob: Scalable SAT Solving On Demand WithDecentralized Job Scheduling |
3 |
| cmstatr: An R Package for Statistical Analysis of Composite MaterialData |
3 |
| COLNA: A Python Package to Analyze Complex, Linear Networks |
3 |
| VisWaterNet: A Python package for visualization ofwater distribution networks |
3 |
| AmpTorch: A Python package for scalablefingerprint-based neural network training on multi-element systems withintegrated uncertainty quantification |
3 |
| nsink: An R package for flow path nitrogen removalestimation |
3 |
| pactus: A Python framework for trajectoryclassification |
3 |
| GridapSolvers.jl: Scalable multiphysics finite elementsolvers in Julia |
3 |
| Thing Directory: Simple and lightweight registry of IoT device metadata |
3 |
| Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets |
3 |
| minorbsem: An R package for structural equation modelsthat account for the influence of minor factors |
3 |
| Metrics As Scores: A Tool- and Analysis Suite andInteractive Application for Exploring Context-DependentDistributions |
3 |
| iceFEM: A FreeFem package for wave induced ice-shelf vibrations |
3 |
| nrCascadeSim - A simulation tool for nuclear recoilcascades resulting from neutron capture |
3 |
| Weave.jl: Scientific Reports Using Julia |
3 |
| AstronomicAL: an interactive dashboard for visualisation, integration and classification of data with Active Learning |
3 |
| mpi4py-fft: Parallel Fast Fourier Transforms with MPI for Python |
3 |
| compareMCMCs: An R package for studying MCMC efficiency |
3 |
| Pyinterpolate: Spatial interpolation in Python forpoint measurements and aggregated datasets |
3 |
| Trash AI: A Web GUI for Serverless Computer VisionAnalysis of Images of Trash |
3 |
| ZOSPy: optical ray tracing in Python throughOpticStudio |
3 |
| PAM: Population Activity Modeller |
3 |
| IKPLS: Improved Kernel Partial Least Squares and FastCross-Validation Algorithms for Python with CPU and GPU ImplementationsUsing NumPy and JAX |
3 |
| MOLE: Mimetic Operators Library Enhanced |
3 |
| movement_primitives: Imitation Learning of CartesianMotion with Movement Primitives |
3 |
| Back to sequences: Find the origin of k-mers |
3 |
| ivis: dimensionality reduction in very large datasets using Siamese Networks |
3 |
| Raphtory: The temporal graph engine for Rust andPython |
3 |
| Volume Segmantics: A Python Package for SemanticSegmentation of Volumetric Data Using Pre-trained PyTorch Deep LearningModels |
3 |
| RSMTool: collection of tools building and evaluating automated scoring models |
3 |
| Melodie: Agent-based Modeling in Python |
3 |
| Dark-field X-ray microscopy visualization |
3 |
| H-RISK with NoiseModelling: a QGIS plugin to predictenvironmental noise and estimate health risks |
3 |
| Interface to high-performance periodic coupled-clustertheory calculations with atom-centered, localized basisfunctions |
3 |
| VOTCA: multiscale frameworks for quantum and classicalsimulations in soft matter |
3 |
| konfound: An R Sensitivity Analysis Package to Quantifythe Robustness of Causal Inferences |
3 |
| VBLinLogit: Variational Bayesian linear and logistic regression |
3 |
| AutoGAMESS: A Python package for automation of GAMESS(US) Raman calculations |
3 |
| ccostr: An R package for estimating mean costs with censored data |
3 |
| Simframe: A Python Framework for Scientific Simulations |
3 |
| GeneScape: A Python package for gene ontology visualization |
3 |
| PoUnce: A framework for automatized uncertaintyquantification simulations on high-performance clusters |
3 |
| ms3: A parser for MuseScore files, serving as datafactory for annotated music corpora |
3 |
| BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data |
3 |
| rfasst: An R tool to estimate air pollution impacts on health and agriculture |
3 |
| BCImat: a Matlab-based framework for IntracorticalBrain-Computer Interfaces and their simulation with an artificialspiking neural network |
3 |
| Wakeflow: A Python package for semi-analytic models ofplanetary wakes |
3 |
| APAV: An Open-Source Python Package for Mass SpectrumAnalysis in Atom Probe Tomography |
3 |
| Fitspy: A Python package for spectraldecomposition |
3 |
| Implicit measures with reproducible results: The implicitMeasures package |
3 |
| NEoST: A Python package for nested sampling of the neutron star equation of state |
3 |
| TopoPyScale: A Python Package for Hillslope ClimateDownscaling |
3 |
| FlexWing-ROM: A matlab framework for data-drivenreduced-order modeling of flexible wings |
3 |
| PyAFBF: a Python library for sampling image texturesfrom the anisotropic fractional Brownian field. |
3 |
| lpjmlkit: A toolkit for operating LPJmL andmodel-specific data processing |
3 |
| matbench-genmetrics: A Python library for benchmarkingcrystal structure generative models using time-based splits of MaterialsProject structures |
3 |
| MimiBRICK.jl: A Julia package for the BRICK model forsea-level change in the Mimi integrated modeling framework |
3 |
| Biosensor Framework: A C# Library for Affective Computing |
3 |
| geneXplainR: An R interface for the geneXplain platform |
3 |
| anywidget: reusable widgets for interactive analysis and visualization in computational notebooks |
3 |
| XLUR: A land use regression wizard for ArcGIS Pro |
3 |
| RTMsim - A Julia module for filling simulations inResin Transfer Moulding with the Finite Area Method |
3 |
| ocean_data_tools: A MATLAB toolbox for interacting with bulk freely-available oceanographic data |
3 |
| IndividualDisplacements.jl: a Julia package to simulate and study particle displacements within the climate system |
3 |
| NiTransforms: A Python tool to read, represent, manipulate, and apply dimensional spatial transforms |
3 |
| SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs. |
3 |
| Koverage: Read-coverage analysis for massive(meta)genomics datasets |
3 |
| stimupy: A Python package for creating stimuli invision science |
3 |
| uravu: Making Bayesian modelling easy(er) |
3 |
| RNMC: kinetic Monte Carlo implementations for complex reaction networks |
3 |
| CLPFUDatabase: A suite of R packages for energyconversion chain analysis |
3 |
| SIAL: A simple image analysis library for wet-lab scientists |
3 |
| Learning Simulator: A simulation software for animal and human learning |
3 |
| Visualization of Multi-Dimensional Data – The data-slicer Package |
3 |
| scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing data |
3 |
| GCIdentifier.jl: A Julia package for identifyingmolecular fragments from SMILES |
3 |
| PERFORM: A Python package for developing reduced-ordermodels for reacting fluid flows |
3 |
| TBFMM: A C++ generic and parallel fast multipole method library |
3 |
| The psyplot interactive visualization framework |
3 |
| VeridicalFlow: a Python package for building trustworthy data science pipelines with PCS |
3 |
| Pyripherals: A Python Package for Communicating withPeripheral Electronic Devices |
3 |
| Contextualized: Heterogeneous Modeling Toolbox |
3 |
| UKCensusAPI: python and R interfaces to the nomisweb UK census data API |
3 |
| HSImage: A Python and C++ library to allow interaction with ENVI-BIL hyperspectral images |
3 |
| Elektra: universal framework to access configuration parameters |
3 |
| GSAreport: Easy to Use Global SensitivityReporting |
3 |
| fuelcell: A Python package and graphical user interface for electrochemical data analysis |
3 |
| REHO: A Decision Support Tool for Renewable EnergyCommunities |
3 |
| HOI: A Python toolbox for high-performance estimationof Higher-Order Interactions from multivariate data |
3 |
| pyhector: A Python interface for the simple climate model Hector |
3 |
| Atomic Simulation Interface (ASI): applicationprogramming interface for electronic structure codes |
3 |
| MultilayerGraphs.jl: Multilayer Network Science inJulia |
3 |
| Aletheia: an open-source toolbox forsteganalysis |
3 |
| sam2lca: Lowest Common Ancestor for SAM/BAM/CRAMalignment files |
3 |
| Economiccomplexity: Computational Methods for Economic Complexity |
3 |
| PetIBM: toolbox and applications of the immersed-boundary method on distributed-memory architectures |
3 |
| GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats |
3 |
| crystal-torture: A crystal tortuosity module |
3 |
| Pannellum: a lightweight web-based panorama viewer |
3 |
| CoreBreakout: Subsurface Core Images to Depth-Registered Datasets |
3 |
| TrackSegNet: a tool for trajectory segmentation intodiffusive states using supervised deep learning |
3 |
| PWSpy: A Python library dedicated to the analysis ofPartial Wave Spectroscopic Microscopy data. |
3 |
| OpenSkill: A faster asymmetric multi-team, multiplayerrating system |
3 |
| Mesa 3: Agent-based modeling with Python in 2025 |
3 |
| colorspace: A Python Toolbox for Manipulating andAssessing Colors and Palettes |
3 |
| archeoViz: an R package for the Visualisation,Exploration, and Web Communication of Archaeological SpatialData |
3 |
| PySLSQP: A transparent Python package for the SLSQPoptimization algorithm modernized with utilities for visualization andpost-processing |
3 |
| Neurosift: DANDI exploration and NWB visualization inthe browser |
3 |
| PyProximal - scalable convex optimization inPython |
3 |
| AstroPaint: A Python Package for Painting Halo Catalogs into Celestial Maps |
2 |
| “Blaster” – a graphical user interface for common sequence analysis tools |
2 |
| epyc: Computational experiment management inPython |
2 |
| MITgcm.jl: a Julia Interface to the MITgcm |
2 |
| Mechkit: A continuum mechanics toolkit inPython |
2 |
| ExoRad 2.0: The generic point source radiometricmodel |
2 |
| HRnV-Calc: A Software for Heart Rate n-Variability andHeart Rate Variability Analysis |
2 |
| BlackBIRDS: Black-Box Inference foR DifferentiableSimulators |
2 |
| SHGYield |
2 |
| PyKronecker: A Python Library for the EfficientManipulation of Kronecker Products and Related Structures |
2 |
| cppTPSA/pyTPSA: a C++/Python package for truncatedpower series algebra |
2 |
| BetterReg: An R package for Useful RegressionStatistics |
2 |
| Quilë: C++ genetic algorithms scientificlibrary |
2 |
| ndcube: Manipulating N-dimensional Astronomical Data inPython |
2 |
| NiaAML: AutoML framework based on stochastic population-based nature-inspired algorithms |
2 |
| cfdm: A Python reference implementation of the CF data model |
2 |
| RFBzero: A Python package for zero-dimensionalsimulation of redox flow battery cycling |
2 |
| dtrackr: An R package for tracking the provenance ofdata |
2 |
| JASP for Audit: Bayesian Tools for the Auditing Practice |
2 |
| High-performance neural population dynamics modelingenabled by scalable computational infrastructure |
2 |
| MODE.behave: A Python Package for Discrete ChoiceModeling |
2 |
| fractopo: A Python package for fracture networkanalysis |
2 |
| OpenCMP: An Open-Source Computational MultiphysicsPackage |
2 |
| Jupyter Scatter: Interactive Exploration of Large-ScaleDatasets |
2 |
| The Babelizer: language interoperability for modelcoupling in the geosciences |
2 |
| pudu: A Python library for agnostic feature selectionand explainability of Machine Learning spectroscopic problems |
2 |
| LGP: A robust Linear Genetic Programming implementation on the JVM using Kotlin. |
2 |
| BIDSonym: a BIDS App for the pseudo-anonymization of neuroimaging datasets |
2 |
| perfectns: perfect dynamic and standard nested sampling for spherically symmetric likelihoods and priors |
2 |
| Dolphin: A Python package for large-scale InSAR PS/DSprocessing |
2 |
| PxMCMC: A Python package for proximal Markov ChainMonte Carlo |
2 |
| pyGCodeDecode: A Python package for time-accurate GCodesimulation in material extrusion processes |
2 |
| xinvert: A Python package for inversion problems ingeophysical fluid dynamics |
2 |
| Abmarl: Connecting Agent-Based Simulations with Multi-Agent Reinforcement Learning |
2 |
| OpenTera: A Framework for TelehealthApplications |
2 |
| fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability |
2 |
| pollucheck v1.0: A package to explore open-source air pollution data |
2 |
| RIAssigner: A package for gas chromatographic retentionindex calculation |
2 |
| skijumpdesign: A Ski Jump Design Tool for Specified Equivalent Fall Height |
2 |
| Lumen: A software for the interactive visualization of probabilistic models together with data |
2 |
| BladeX: Python Blade Morphing |
2 |
| _: Intuitive Scientific Computing withDimension Types for Jax, PyTorch, TensorFlow & NumPy |
2 |
| AMLTK: A Modular AutoML Toolkit in Python |
2 |
| PACMAN: A pipeline to reduce and analyze Hubble WideField Camera 3 IR Grism data |
2 |
| special: A Python package for the spectralcharacterization of directly imaged low-mass companions |
2 |
| serp: An R package for smoothing in ordinal regression |
2 |
| QMix: A Python package for simulating the quasiparticle tunneling currents in SIS junctions |
2 |
| experDesign: stratifying samples into batches with minimal bias |
2 |
| ECabc: A feature tuning program focused on Artificial Neural Network hyperparameters |
2 |
| Fortuna.jl: Structural and System Reliability Analysisin Julia |
2 |
| DORiE: A Discontinuous Galerkin Solver for Soil WaterFlow and Passive Solute Transport Based on DUNE |
2 |
| riccati: an adaptive, spectral solver for oscillatoryODEs |
2 |
| densify: An R package to reduce empty cells in dataframes of typological linguistic data |
2 |
| cuIBM: a GPU-based immersed boundary method code |
2 |
| LinRegOutliers: A Julia package for detecting outliers in linear regression |
2 |
| astrosource: automating optical astronomy measurement, calibration and analysis for variable stellar sources from provided photometry |
2 |
| J2suscep: Calculation of magnetic exchange coupling and temperature dependence of magnetic susceptibility |
2 |
| bistablehistory: an R package for history-dependent analysis of perceptual time series |
2 |
| GAIM: A C++ library for Genetic Algorithms and Island Models |
2 |
| orbitize! v3: Orbit fitting for the High-contrastImaging Community |
2 |
| AdOpT-NET0: A technology-focused Python package for the optimization of multi-energy systems |
2 |
| OpenRepGrid: An R Package for the Analysis of Repertory Grid Data |
2 |
| OpenRepGrid.ic: A software for InterpretiveClustering |
2 |
| cartoee: Publication quality maps using Earth Engine |
2 |
| CalibrateEmulateSample.jl: Accelerated ParametricUncertainty Quantification |
2 |
| FreqAI: generalizing adaptive modeling for chaotictime-series market forecasts |
2 |
| pygetpapers: a Python library for automated retrievalof scientific literature |
2 |
| HW2D: A reference implementation of theHasegawa-Wakatani model for plasma turbulence in fusion reactors |
2 |
| PEFAP : Estimating the environmental footprint of foodproducts from packaging data |
2 |
| TriP: A Python package for the kinematic modeling ofserial-parallel hybrid robots |
2 |
| scida: scalable analysis for scientific bigdata |
2 |
| SlicerSPECTRecon: A 3D Slicer Extension for SPECT Image Reconstruction |
2 |
| SiSyPHE: A Python package for the Simulation of Systems of interacting mean-field Particles with High Efficiency |
2 |
| shmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Python |
2 |
| Off-resonance CorrecTion OPen soUrce Software (OCTOPUS) |
2 |
| Grama: A Grammar of Model Analysis |
2 |
| A Python module to combine p values arising fromdiscrete tests. |
2 |
| BTE: a Python module for pandemic-scalemutation-annotated phylogenetic trees |
2 |
| ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees |
2 |
| AdaptiveResonance.jl: A Julia Implementation ofAdaptive Resonance Theory (ART) Algorithms |
2 |
| gaussplotR: Fit, Predict and Plot 2D-Gaussians in R |
2 |
| G3F: Global, Multidimensional Spectral Regression Analysis |
2 |
| hf_hydrodata: A Python package for accessing hydrologicsimulations and observations across the United States |
2 |
| python-ags4: A Python library to read, write, andvalidate AGS4 geodata files |
2 |
| PsiRESP: calculating RESP charges with Psi4 |
2 |
| cosasi: Graph Diffusion Source Inference inPython |
2 |
| Paicos: A Python package for analysis of (cosmological)simulations performed with Arepo |
2 |
| ssdtools v2: An R package to fit Species Sensitivity Distributions |
2 |
| piglot: an Open-source Package for Derivative-freeOptimisation of Numerical Responses |
2 |
| CoPro: a data-driven modelling framework for conflict risk projections |
2 |
| yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML |
2 |
| Olaf: a lightweight, portable audio searchsystem |
2 |
| chessboard: An R package for creating networkconnections based on chess moves |
2 |
| cifkit: A Python package for coordination geometry andatomic site analysis |
2 |
| cppduals: a nestable vectorized templated dual number library for C++11 |
2 |
| PyPVRPM: Photovoltaic Reliability and Performance Modelin Python |
2 |
| SG-t-SNE-Π: Swift Neighbor Embedding of Sparse Stochastic Graphs |
2 |
| MatD3: A Database and Online Presentation Package for Research Data Supporting Materials Discovery, Design, and Dissemination |
2 |
| QAOA.jl: Toolkit for the Quantum and Mean-FieldApproximate Optimization Algorithms |
2 |
| AutoBZ.jl: Automatic, adaptive Brillouin zoneintegration using Wannier interpolation |
2 |
| : A Java library of randomization enhancementsand other math utilities |
2 |
| WSKNN - Weighted Session-based K-NN recommendersystem |
2 |
| OfflineMOT: A Python package for multiple objectsdetection and tracking from bird view stationary drone videos |
2 |
| Synch: A framework for concurrent data-structures and benchmarks |
2 |
| Taweret: a Python package for Bayesian modelmixing |
2 |
| lightcurver: A Python Pipeline for Precise Photometryof Multiple-Epoch Wide-Field Images |
2 |
| compboost: Modular Framework for Component-Wise Boosting |
2 |
| survxai: an R package for structure-agnostic explanations of survival models |
2 |
| OPSDN: an enhanced SDN simulation framework for OPNETModeler |
2 |
| The Generalized Green’s function Cluster Expansion: APython package for simulating polarons |
2 |
| Chromatiblock: scalable whole-genome visualization of structural differences in prokaryotes |
2 |
| ORMIR_XCT: A Python package for high resolutionperipheral quantitative computed tomography image processing |
2 |
| mmaqshiny v1.0: R-Shiny package to explore Air-Quality Mobile-Monitoring data |
2 |
| Production Function Estimation in R: The prodest Package |
2 |
| DBMS-Benchmarker: Benchmark and Evaluate DBMS inPython |
2 |
| SpeedyWeather.jl: Reinventing atmospheric generalcirculation models towards interactivity and extensibility |
2 |
| pentapy: A Python toolbox for pentadiagonal linear systems |
2 |
| workloopR: Analysis of work loops and other data from muscle physiology experiments in R |
2 |
| Hypothesize: Robust Statistics for Python |
2 |
| PET2BIDS: a library for converting Positron EmissionTomography data to BIDS |
2 |
| daiquiri: Data Quality Reporting for TemporalDatasets |
2 |
| Starmatrix: Modelling nucleosynthesis of galacticchemical elements |
2 |
| SATLLA0: A Flight Software Platform for Aerospace andSTEM Education |
2 |
| lczexplore: an R package to explore Local Climate Zoneclassifications |
2 |
| Simple DFT-D3: Library first implementation of the D3dispersion correction |
2 |
| WATTS: Workflow and template toolkit forsimulation |
2 |
| Easy16S: a user-friendly Shiny web-service forexploration and visualization of microbiome data. |
2 |
| biotmle: Targeted Learning for Biomarker Discovery |
2 |
| Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics |
2 |
| MassMine: Your Access To Data |
2 |
| Sepia, a taxonomy oriented read classifier in Rust |
2 |
| SEEDPOD Ground Risk: A Python application and libraryfor Uncrewed Aerial Systems ground risk analysis and risk-aware pathfinding |
2 |
| DESPASITO: A Python Package for SAFT EOS Parametrization and Thermodynamic Calculations |
2 |
| ROCK: digital normalization of whole genome sequencingdata |
2 |
| maxsmooth: Derivative Constrained Function Fitting |
2 |
| POMDPStressTesting.jl: Adaptive Stress Testing for Black-Box Systems |
2 |
| MCALF: Multi-Component Atmospheric Line Fitting |
2 |
| Xponge: A Python package to perform pre- andpost-processing of molecular simulations |
2 |
| COOLEST: COde-independent Organized LEnsSTandard |
2 |
| DMStag: Staggered, Structured Grids for PETSc |
2 |
| HiPart: Hierarchical Divisive ClusteringToolbox |
2 |
| PyArmadillo: a streamlined linear algebra library for Python |
2 |
| G’MIC: An Open-Source Self-Extending Framework for Image Processing |
2 |
| Fireworks: Reproducible Machine Learning and Preprocessing with PyTorch |
2 |
| Scowl: a Scala DSL for programming with the OWL API |
2 |
| tfaip - a Generic and Powerful Research Framework for Deep Learning based on Tensorflow |
2 |
| DCISolver.jl: A Julia Solver for Nonlinear Optimization using Dynamic Control of Infeasibility |
2 |
| VRPy: A Python package for solving a range of vehicle routing problems with a column generation approach |
2 |
| psi-collect: A Python module for post-storm image collection and cataloging |
2 |
| DNAtools: Tools for Analysing Forensic Genetic DNA Data |
2 |
| treemaker: A Python tool for constructing a Newick formatted tree from a set of classifications. |
2 |
| PlantSimEngine: A Simulation Engine For TheSoil-Plant-Atmosphere System |
2 |
| Cthulhu: An Open Source Molecular and Atomic CrossSection Computation Code for Substellar Atmospheres |
2 |
| BellDiagonalQudits: A package for entanglement analysesof mixed maximally entangled qudits |
2 |
| ctbench - compile-time benchmarking andanalysis |
2 |
| PySPI: A python analysis framework forINTEGRAL/SPI |
2 |
| pypromice: A Python package for processing automatedweather station data |
2 |
| straditize: Digitizing stratigraphic diagrams |
2 |
| histoc: Histocompatibility analysis performed by kidneyallocation systems |
2 |
| The ppmData R-package for setting up spatial point process models |
2 |
| unfold: removing the barriers to sharing andreproducing prospective life-cycle assessment databases |
2 |
| Reggae: A Parametric Tuner for PBJam, and aVisualization Tool for Red Giant Oscillation Spectra |
2 |
| DASF: A data analytics software framework fordistributed environments |
2 |
| pyflowline: a mesh-independent river network generatorfor hydrologic models |
2 |
| Pipengine: an ultra light YAML-based pipeline execution engine |
2 |
| epiworldR: Fast Agent-Based Epi Models |
2 |
| DE-Sim: an object-oriented, discrete-event simulation tool for data-intensive modeling of complex systems in Python |
2 |
| FRIDGe: Fast Reactor Input Deck Generator |
2 |
| CoreRobotics: An object-oriented C++ library with cross-language wrappers for cross-platform robot control |
2 |
| partycls: A Python package for structural clustering |
2 |
| iced: fast and memory efficient normalization of contact maps |
2 |
| fitODBOD: An R Package to Model Binomial Outcome Data using Binomial Mixture and Alternate Binomial Distributions. |
2 |
| ezknitr: Avoid the Typical Working Directory Pain When Using ‘knitr’ |
2 |
| VaMPy: An Automated and Objective Pipeline for ModelingVascular Geometries |
2 |
| AutoRA: Automated Research Assistant for Closed-LoopEmpirical Research |
2 |
| ReinforcementLearning: A Package to Perform Model-Free Reinforcement Learning in R |
2 |
| ConFluxPro: A toolkit for soil gas analysis |
2 |
| SonoUno development: a User-Centered Sonificationsoftware for data analysis |
2 |
| gym-saturation: an OpenAI Gym environment forsaturation provers |
2 |
| py2lispIDyOM: A Python package for the informationdynamics of music (IDyOM) model |
2 |
| BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology. |
2 |
| humanleague: a C++ microsynthesis package with R and python interfaces |
2 |
| rcites: An R package to access the CITES Speciesplus database |
2 |
| EmissV: an R package to create vehicular and other emissions for air quality models |
2 |
| rucrdtw: Fast time series subsequence search in R |
2 |
| MWRpy: A Python package for processing microwaveradiometer data |
2 |
| caracas: Computer algebra in R |
2 |
| Siril: An Advanced Tool for Astronomical ImageProcessing |
2 |
| PANINIpy: Package of Algorithms for NonparametricInference with Networks In Python |
2 |
| FuzzyClass: A family of Fuzzy and Non-Fuzzyprobabilistic-based classifiers |
2 |
| tsp (“Teaspoon”): A library for ground temperaturedata |
2 |
| mcboost: Multi-Calibration Boosting for R |
2 |
| EMBERS: Experimental Measurement of BEam Responses with Satellites |
2 |
| idpflex: Analysis of Intrinsically Disordered Proteins by Comparing Simulations to Small Angle Scattering Experiments |
2 |
| OTTO: A Python package to simulate, solve and visualizethe source-tracking POMDP |
2 |
| QuasinormalModes.jl: A Julia package for computingdiscrete eigenvalues of second order ODEs |
2 |
| PreliZ: A tool-box for prior elicitation |
2 |
| SpecpolFlow: a new software package for spectropolarimetry using Python |
2 |
| Unishox: A hybrid encoder for Short Unicode Strings |
2 |
| HCP: A Matlab package to create beautiful heatmaps with richly annotated covariates |
2 |
| Critical care data processing tools |
2 |
| EndoMineR for the extraction of endoscopic and associated pathology data from medical reports |
2 |
| SeqPeelSort: a spike sorting algorithm for single sensillum recordings |
2 |
| Managing Larger Data on a GitHub Repository |
2 |
| checkpoint_schedules: schedules for incrementalcheckpointing of adjoint simulations |
2 |
| stanscofi and benchscofi: a new standard for drugrepurposing by collaborative filtering |
2 |
| SimuPy Flight Vehicle Toolkit |
2 |
| cppdlr: Imaginary time calculations using the discreteLehmann representation |
2 |
| DTW-C++: Fast dynamic time warping and clustering oftime series data |
2 |
| MF2: A Collection of Multi-Fidelity Benchmark Functions in Python |
2 |
| ParticleScattering: Solving and optimizing multiple-scattering problems in Julia |
2 |
| hdme: High-Dimensional Regression with Measurement Error |
2 |
| ZodiPy: A Python package for zodiacal lightsimulations |
2 |
| fseval: A Benchmarking Framework for Feature Selectionand Feature Ranking Algorithms |
2 |
| s(ound)lab: An easy to learn Python package for designing and running psychoacoustic experiments. |
2 |
| hopit: An R Package for Analysis of Reporting Behavior Using Generalized Ordered Probit Models |
2 |
| GrainLearning: A Bayesian uncertainty quantificationtoolbox for discrete and continuum numerical models of granularmaterials |
2 |
| MCSD: A MATLAB Tool for Monte-Carlo Simulations of Diffusion in biological Tissues |
2 |
| cffr: Generate Citation File Format Metadata for R Packages |
2 |
| DscoreApp: An user-friendly web application for computing the Implicit Association Test D-score |
2 |
| pvpumpingsystem: A Python package for modeling and sizing photovoltaic water pumping systems |
2 |
| Lerche: Generating data file processors in Julia from EBNF grammars |
2 |
| Simulating instrumental systematics of Cosmic Microwave Background experiments with s4cmb |
2 |
| mcbette: model comparison using babette |
2 |
| Open-Source Pattern Creation Tool for Medical ExtendedReality Image Quality Assessment |
2 |
| stacks: Stacked Ensemble Modeling with Tidy DataPrinciples |
2 |
| geocmeans: An R package for spatial fuzzyc-means |
2 |
| REDCapTidieR: Extracting complex REDCap databases intotidy tables |
2 |
| PyNeuroTrace - Python code for neural activity timeseries |
2 |
| LyceanEM: A python package for virtual prototyping ofantenna arrays, time and frequency domain channel modelling |
2 |
| Cacatoo: building, exploring, and sharing spatially structured models of biological systems |
2 |
| mrivis: Medical image visualization library for neuroscience in python |
2 |
| Ising_OPV v4.0: Experimental Tomography Data Import, Interpretation, and Analysis |
2 |
| Opycleid: A Python package for transformational music theory |
2 |
| x11docker: Run GUI applications in Docker containers |
2 |
| A Julia package for bilevel optimization problems |
2 |
| ClusterValidityIndices.jl: Batch and IncrementalMetrics for Unsupervised Learning |
2 |
| GeoHexViz: A Python package for the visualizinghexagonally binned geospatial data |
2 |
| GATree: Evolutionary decision tree classifier inPython |
2 |
| IonDiff: command-line tool to identify ionic diffusionevents and hopping correlations in molecular dynamicssimulations |
2 |
| slurmR: A lightweight wrapper for HPC with Slurm |
2 |
| Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity |
2 |
| overviewR - Easily Explore Your Data in R |
2 |
| LibSWIFFT - A fast C/C++ Library for the SWIFFT Secure Homomorphic Hash Function |
2 |
| FEniCS-arclength: A numerical continuation package inFEniCS for nonlinear problems in solid mechanics |
2 |
| LBR-Stack: ROS 2 and Python Integration of KUKA FRI forMed and IIWA Robots |
2 |
| GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files |
2 |
| SeleDiff: A fast and scalable tool for estimating and testing selection differences between populations |
2 |
| splot - visual analytics for spatial statistics |
2 |
| OnlineStats.jl: A Julia package for statistics on data streams |
2 |
| rtdpy: A python package for residence time distributions |
2 |
| OpenMSIStream: A Python package for facilitatingintegration of streaming data in diverse laboratory environments |
2 |
| BetaML: The Beta Machine Learning Toolkit, a self-contained repository of Machine Learning algorithms in Julia |
2 |
| funsies: A minimalist, distributed and dynamic workflow engine |
2 |
| wbacon: Weighted BACON algorithms for multivariate outlier nomination (detection) and robust linear regression |
2 |
| SPM 25: open source neuroimaging analysis software |
2 |
| HyperCoast: A Python Package for Visualizing andAnalyzing Hyperspectral Data in Coastal Environments |
2 |
| spINAR: An R Package for Semiparametric and ParametricEstimation and Bootstrapping of Integer-Valued Autoregressive (INAR)Models |
2 |
| Annotate-Lab: Simplifying Image Annotation |
2 |
| CosmicProfiles: A Python package for radial profilingof finitely sampled dark matter halos and galaxies |
2 |
| graphenv: a Python library for reinforcement learningon graph search spaces |
2 |
| shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment |
2 |
| pydynpd: A Python package for dynamic panelmodel |
2 |
| PlanetMapper: A Python package for visualising,navigating and mapping Solar System observations |
2 |
| MiNAA: Microbiome Network Alignment Algorithm |
2 |
| scikit-eo: A Python package for Remote Sensing DataAnalysis |
2 |
| AutoFunc: A Python package for automating and verifying functional modeling |
2 |
| EPyT-Flow: A Toolkit for Generating Water DistributionNetwork Data |
2 |
| A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it. |
2 |
| Open Source Optical Coherence Tomography Software |
2 |
| mbir: Magnitude-Based Inferences |
2 |
| bmiptools: BioMaterials Image Processing Tools |
2 |
| Bramble: adaptive common neighbor analysis (CNA) forthe recognition of surface topologies in nanoparticles |
2 |
| ASIMTools: A lightweight framework for scalable andreproducible atomic simulations |
2 |
| xagg: A Python package to aggregate gridded data onto polygons |
2 |
| StormR: An R package to quantify and map the tropicalstorms and cyclones’ winds characteristics |
2 |
| LaMa: a thematic labelling web application |
2 |
| PyView: A general purpose tool for analyzing calciumimaging data |
2 |
| gcamreport: An R tool to process and standardize GCAMoutputs |
2 |
| abcvoting: A Python package for approval-basedmulti-winner voting rules |
2 |
| MSMetaEnhancer: A Python package for mass spectrametadata annotation |
2 |
| TensorInference: A Julia package for tensor-based probabilistic inference |
2 |
| sparse-lm: Sparse linear regression models inPython |
2 |
| dms2dfe: Comprehensive Workflow for Analysis of Deep Mutational Scanning Data |
2 |
| js-emass: A flexible JavaScript implementation of the emass algorithm |
1 |
| sacio: A library for Seismic Analysis Code data files |
1 |
| modelDown: automated website generator with interpretable documentation for predictive machine learning models |
1 |
| lawn: An R client for the Turf Javascript Library for Geospatial Analysis |
1 |
| bleiglas: An R package for interpolation and visualisation of spatiotemporal data with 3D tessellation |
1 |
| PhysioLabXR: A Python Platform for Real-Time,Multi-modal, Brain–Computer Interfaces and Extended RealityExperiments |
1 |
| osmapiR: An ‘OpenStreetMap API’ implementation forR |
1 |
| gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API |
1 |
| Psifr: Analysis and visualization of free recall data |
1 |
| genieR: An R package for inference of demographic history of phylogenies |
1 |
| ThermoCodegen: a python/C++ package for the generationof custom thermodynamic models |
1 |
| Spiner: Performance Portable Routines for Generic,Tabulated, Multi-Dimensional Data |
1 |
| hessQuik: Fast Hessian computation of compositefunctions |
1 |
| baseflow: a MATLAB and GNU Octave package for baseflowrecession analysis |
1 |
| SIMIO-continuum: Connecting simulations to ALMAobservations |
1 |
| bittrex: An R client for the Bittrex Crypto-Currency Exchange |
1 |
| pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics |
1 |
| mitolina: MITOchondrial LINeage Analysis |
1 |
| TipToft: detecting plasmids contained in uncorrected long read sequencing data |
1 |
| BayesMFSurv: An R Package to Estimate Bayesian Split-Population Survival Models With (and Without) Misclassified Failure Events |
1 |
| pystiche: A Framework for Neural Style Transfer |
1 |
| gobbli: A uniform interface to deep learning for text in Python |
1 |
| visxhclust: An R Shiny package for visual exploration of hierarchical clustering |
1 |
| RedOak: a reference-free and alignment-free structurefor indexing a collection of similar genomes |
1 |
| TDLM: An R package for a systematic comparison of tripdistribution laws and models |
1 |
| Viable North Sea (ViNoS): A NetLogo Agent-based Modelof German Small-scale Fisheries |
1 |
| SpiDy.jl: open-source Julia package for the study ofnon-Markovian stochastic dynamics |
1 |
| LinguiPhyR: A Package for Linguistic PhylogeneticAnalysis in R |
1 |
| nimbleHMC: An R package for Hamiltonian Monte Carlosampling in nimble |
1 |
| The ARC-OPT Library for Whole-Body Control of Robotic Systems |
1 |
| REGENS: an open source Python package for simulating realistic autosomal genotypes |
1 |
| highlightHTML: CSS Formatting of R Markdown Documents |
1 |
| geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events |
1 |
| buildH: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters |
1 |
| Sensie: Probing the sensitivity of neural networks |
1 |
| CORA and LOGIGRAM: A Duo of Python Packages forCombinational Regularity Analysis (CORA) |
1 |
| Mantik: A Workflow Platform for the Development ofArtificial Intelligence on High-Performance ComputingInfrastructures |
1 |
| SleepECG: a Python package for sleep staging based onheart rate |
1 |
| limHaloPT: A Numerical Package for Accurate Modeling ofLine Intensity Power Spectrum |
1 |
| planetMagFields: A Python package for analyzing andplotting planetary magnetic field data |
1 |
| NEMESISPY: A Python package for simulating andretrieving exoplanetary spectra |
1 |
| CausalTables.jl: Simulating and storing data for statistical causal inference in Julia |
1 |
| Moead-framework: a modular MOEA/D Pythonframework |
1 |
| SOAP: A Python Package for Calculating the Properties of Galaxies and Halos Formed in Cosmological Simulations |
1 |
| Phylogemetric: A Python library for calculating phylogenetic network metrics |
1 |
| getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data |
1 |
| A MATLAB-based Instrument Control (MIC) package for fluorescence imaging |
1 |
| DARTS: The Data Analysis Remote TreatmentService |
1 |
| SAMBA: A Trainable Segmentation Web-App with SmartLabelling |
1 |
| udpPacketManager: An International LOFAR Station Data(Pre-)Processor |
1 |
| chemotools: A Python Package that IntegratesChemometrics and scikit-learn |
1 |
| DiRe - JAX: A JAX based Dimensionality Reduction Algorithm for Large-scale Data |
1 |
| GeophysicalModelGenerator.jl: A Julia package to visualise geoscientific data and create numerical model setups |
1 |
| FitBenchmarking: an open source Python package comparing data fitting software |
1 |
| ConTEXT Explorer: a web-based text analysis tool for exploring and visualizing concepts across time |
1 |
| learningCurve: An implementation of Crawford’s and Wright’s learning curve production functions |
1 |
| PyGDH: Python Grid Discretization Helper |
1 |
| EXP: a Python/C++ package for basis function expansion methods in galactic dynamics |
1 |
| GridFormat: header-only C++-library for grid fileI/O |
1 |
| gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data |
1 |
| TREvoSim v3: An individual based simulation forgenerating trees and character data |
1 |
| Project RACCOON: Automated construction of PDB filesfor polymers and polymer peptide conjugates |
1 |
| Kirstine.jl: A Julia Package for Bayesian OptimalDesign of Experiments |
1 |
| GLUE Code: A framework handling communication andinterfaces between scales |
1 |
| PII-Codex: a Python library for PII detection,categorization, and severity assessment |
1 |
| SuchTree: Fast, thread-safe computations with phylogenetic trees |
1 |
| CLOOPSy - Copernicus Land cOver crOwdsourcing Platform for Sentinel-based mapping |
1 |
| jstor: Import and Analyse Data from Scientific Texts |
1 |
| swsc: A sitewise UCE partitioner |
1 |
| POSSA: Power simulation for sequential analyses andmultiple hypotheses |
1 |
| E2EDNA 2.0: Python Pipeline for Simulating DNA Aptamerswith Ligands |
1 |
| Scarlet: Scalable Anytime Algorithms for LearningFragments of Linear Temporal Logic |
1 |
| IMPPY3D: Image Processing in Python for 3D Image Stacks |
1 |
| TDApplied: An R package for machine learning andinference with persistence diagrams |
1 |
| weatherOz: An API Client for Australian Weather andClimate Data Resources in R |
1 |
| GGoutlieR: an R package to identify and visualizeunusual geo-genetic patterns of biological samples |
1 |
| The o80 C++ templated toolbox: Designing customized Python APIs for synchronizing realtime processes |
1 |
| ParticleTracker: a gui based particle tracking software |
1 |
| The Glasgow Fortran Source-to-Source Compiler |
1 |
| MatDL: A Lightweight Deep Learning Library in MATLAB |
1 |
| AuditoryStimuli.jl: A Julia package for generating real-time auditory stimuli |
1 |
| KielMAT: Kiel Motion Analysis Toolbox - An Open-SourcePython Toolbox for Analyzing Neurological Motion Data from VariousRecording Modalities |
1 |
| ALUES: R package for Agricultural Land Use EvaluationSystem |
1 |
| PyBCI: A Python Package for Brain-Computer Interface(BCI) Design |
1 |
| Psymple: A Python package for complex systems modelling |
1 |
| Mobilkit: A Python Toolkit for Urban Resilience andDisaster Risk Management Analytics |
1 |
| Snk: A Snakemake CLI and Workflow ManagementSystem |
1 |
| COBRAPRO: A MATLAB toolbox for Physics-based Battery Modeling and Co-simulation Parameter Optimization |
1 |
| Exploring meaningful visual effects and quantities of interest from dynamic models through dynamac |
1 |
| MRI-NUFFT: Doing non-Cartesian MRI has never been easier |
1 |
| The fqar package: R tools for analyzing floristicquality assessment data |
1 |
| hectorui: A web-based interactive scenario builder and visualization application for the Hector climate model |
1 |
| forestatrisk: a Python package for modelling and forecasting deforestation in the tropics |
1 |
| MaDaTS: Managing Data on Tiered Storage for Scientific Workflows |
1 |
| KinESim: Pre-equilibrium kinetic simulation of electrochemical reactions |
1 |
| sectionproperties: A Python package for the analysis ofarbitrary cross-sections using the finite element method |
1 |
| UBayFS: An R Package for User Guided FeatureSelection |
1 |
| pySBeLT: A Python software package for stochasticsediment transport under rarefied conditions |
1 |
| CiteLang: Modeling the Research SoftwareEcosystem |
1 |
| Castor: A C++ library to code “à la Matlab” |
1 |
| FEM_2D: A Rust Package for 2D Finite Element MethodComputations with Extensive Support for hp-refinement |
1 |
| The stantargets R package: a workflow framework for efficient reproducible Stan-powered Bayesian data analysis pipelines |
1 |
| CheckQC: Quick quality control of Illumina sequencing runs |
1 |
| MCycle: A Python package for 1D sizing and analysis of thermodynamic power cycles |
1 |
| Prest: Open-Source Software for Computational Revealed Preference Analysis |
1 |
| Optimising Light Source Positioning for Even and Flux-Efficient Illumination |
1 |
| A C++ Implementation of a Cartesian ImpedanceController for Robotic Manipulators |
1 |
| CRE: An R package for interpretable discovery andinference of heterogeneous treatment effects |
1 |
| GECo: A collection of solvers for the self-gravitatingVlasov equations |
1 |
| Synaptus: A Matlab/Octave toolbox for syntheticaperture ultrasound imaging |
1 |
| CutePeaks: A modern viewer for Sanger trace file |
1 |
| OnToCode: Template-based code-generation from ontologies |
1 |
| MitoHEAR: an R package for the estimation anddownstream statistical analysis of the mitochondrial DNA heteroplasmycalculated from single-cell datasets |
1 |
| hmis: A python tool to visualize and analyze HMIS data |
1 |
| RBF: An R package to compute a robust backfitting estimator for additive models |
1 |
| Bioassays: a new package in R for analyzing cellular assays |
1 |
| ComplexRegions.jl: A Julia package for regions in the complex plane |
1 |
| DWBuilder: A code to generateferroelectric/ferroelastic domain walls and multi-material atomicinterface structures |
1 |
| cblearn: Comparison-based Machine Learning inPython |
1 |
| SurPyval: Survival Analysis with Python |
1 |
| FastVPINNs: An efficient tensor-based Python libraryfor solving partial differential equations using hp-Variational PhysicsInformed Neural Networks |
1 |
| GluPredKit: A Python Package for Blood GlucosePrediction and Evaluation |
1 |
| rOPTRAM: Deriving Soil Moisture from Satellite Imageryin R |
1 |
| CategoricalTimeSeries.jl: A toolbox for categorical time-series analysis |
1 |
| The AutoActive Research Environment |
1 |
| Reiz: Structural Source Code Search |
1 |
| PyAstroPol: A Python package for the instrumental polarization analysis of the astronomical optics. |
1 |
| Bodge: Python package for efficient tight-bindingmodeling of superconducting nanostructures |
1 |
| OrNet - a Python Toolkit to Model the Diffuse Structure of Organelles as Social Networks |
1 |
| DoSOCS: A System for SPDX 2.0 Document Creation and Storage |
1 |
| TRUNAJOD: A text complexity library to enhance natural language processing |
1 |
| PyGModels: A Python package for exploring Probabilistic Graphical Models with Graph Theoretical Structures |
1 |
| autumn: A Python library for dynamic modelling of captured CO2 cost potential curves |
1 |
| Singularity Compose: Orchestration for Singularity Instances |
1 |
| LFSpy: A Python Implementation of Local Feature Selection for Data Classification with scikit-learn Compatibility |
1 |
| HoverFast: an accurate, high-throughput, clinicallydeployable nuclear segmentation tool for brightfield digital pathologyimages |
1 |
| ShOpt.jl: A Julia Package for Empirical Point SpreadFunction Characterization of JWST NIRCam Data |
1 |
| Learning from Crowds with Crowd-Kit |
1 |
| Phasik: a Python package to identify system states in partially temporal networks |
1 |
| Shapelets: A Python package implementing shapeletfunctions and their applications |
1 |
| MetaGenePipe: An Automated, Portable Pipeline forContig-based Functional and Taxonomic Analysis |
1 |
| Efficiently Learning Relative Similarity Embeddingswith Crowdsourcing |
1 |
| shmem4py: OpenSHMEM for Python |
1 |
| zalpha: an R package for the identification of regions of the genome under selection |
1 |
| ASTE: An artificial solver testing environment forpartitioned coupling with preCICE |
1 |
| Clouddrift: a Python package to accelerate the use ofLagrangian data for atmospheric, oceanic, and climate sciences |
1 |
| DataAssimilationBenchmarks.jl: a data assimilationresearch framework. |
1 |
| pyEQL: A Python interface for water chemistry |
1 |
| The Spreadsheet Energy System Model Generator (SESMG):A tool for the optimization of urban energy systems |
1 |
| TUM Open Infra Platform: an open source package forsimultaneous viewing and analysis of digital models in the civilengineering domain |
1 |
| beamshapes: a Python package to generate directivity patterns for various sound source models |
1 |
| pyuvdata v3: an interface for astronomical interferometric data sets in Python |
1 |
| ComPlot: Comparison Plotter to visually evaluate ocean model simulations |
1 |
| Grafoscopio: A moldable tool for literate computing and reproducible research |
1 |
| Django Remote Submission |
1 |
| ElectricGrid.jl - A Julia-based modeling and simulationtool for power electronics-driven electric energy grids |
1 |
| Surjectors: surjection layers for density estimationwith normalizing flows |
1 |
| COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements |
1 |
| Additive Bayesian Networks |
1 |
| FiLiP: A python software development kit (SDK) foraccelerating the development of services based on FIWARE IoTplatform |
1 |
| Krang: Kerr Raytracer for Analytic NullGeodesics |
1 |
| Adamantine 1.0: A Thermomechanical Simulator forAdditive Manufacturing |
1 |
| pyCADMium: Chemical Atoms in Diatomic Molecules. Aprolate spheroidal Python module for embedding calculations |
1 |
| ARCHES PiCar-X: Software for Digital TwinResearch |
1 |
| DSSE: An environment for simulation of reinforcementlearning-empowered drone swarm maritime search and rescuemissions |
1 |
| Singularity-EOS: Performance Portable Equations ofState and Mixed Cell Closures |
1 |
| piar: Price Index Aggregation in R |
1 |
| ENASearch: A Python library for interacting with ENA’s API |
1 |
| Embeddings.jl: easy access to pretrained word embeddings from Julia |
1 |
| tcherry: Learning the structure of tcherry trees |
1 |
| Graph Transliterator: A graph-based transliteration tool |
1 |
| RCaller: A Java package for interfacing R |
1 |
| A Python Library for Pre- and Post-Processing of DAMASK Simulations |
1 |
| VineCopulas: an open-source Python package for vinecopula modelling |
1 |
| GiNaCDE: the high-performance F-expansion and FirstIntegral Methods with C++ library for solving Nonlinear DifferentialEquations |
1 |
| AGNI: A radiative-convective model for lava planet atmospheres |
1 |
| PyDGN: a Python Library for Flexible and ReproducibleResearch on Deep Learning for Graphs |
1 |
| Caliscope: GUI Based Multicamera Calibration and MotionTracking |
1 |
| vbvs.concurrent: Fitting Methods for the Functional Linear Concurrent Model |
1 |
| Pandarus: GIS toolkit for regionalized life cycle assessment |
1 |
| A framework for generating interactive reports for cancer genome analysis |
1 |
| Sapsan: Framework for Supernovae Turbulence Modeling with Machine Learning |
1 |
| eights: BS 8888:2011 first angle projection drawings from FreeCAD 3D model |
1 |
| WGS2NCBI - Toolkit for preparing genomes for submission to NCBI |
1 |
| DataRepExp: a R shiny Application that makes Data FAIRfor Data Repositories |
1 |
| SwiftVISA: Controlling Instrumentation with aSwift-based Implementation of the VISA Communication Protocol |
1 |
| CMakePPLang: An object-oriented extension toCMake |
1 |
| GOBLIN Lite: A National Land Balance Model forAssessment of Climate Mitigation Pathways for Ireland. |
1 |
| cd2es: Converting climate data to energy system input data |
1 |
| Delira: A High-Level Framework for Deep Learning in Medical Image Analysis |
1 |
| SALSA: A Python Package for Constructing Synthetic Quasar Absorption Line Catalogs from Astrophysical Hydrodynamic Simulations |
1 |
| h5preserve: Thin wrapper around h5py, inspired by camel |
1 |
| R3D2: Relativistic Reactive Riemann problem solver for Deflagrations and Detonations |
1 |
| SOUPy: Stochastic PDE-constrained optimization underhigh-dimensional uncertainty in Python |
1 |
| MNELAB: a graphical user interface forMNE-Python |
1 |
| WearableHRV: A Python package for the validation ofheart rate and heart rate variability in wearables |
1 |
| pylattica: a package for prototyping lattice models inchemistry and materials science |
1 |
| Chitin Builder: a VMD tool for the generation ofstructures of chitin molecular crystals for atomisticsimulations |
1 |
| SONIC: Software for Optical Navigation and InstrumentCalibration |
1 |
| kiwiPy: Robust, high-volume, messaging for big-data and computational science workflows |
1 |
| Reorient: A Web tool for reorienting and cropping MRI data. |
1 |
| GIMS: Graphical Interface for Materials Simulations |
1 |
| FGTpartitioner: A rapid method for parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets |
1 |
| ‘StreamPoseML’ An End-to-End Open-Source Web Application and Python Toolkit for Real-Time Video Pose Classification and Machine Learning |
1 |
| Delta-Rice: A HDF5 Compression Plugin optimized forDigitized Detector Data |
1 |
| Hyperelastics.jl: A Julia package for hyperelasticmaterial modelling with a large collection of models |
1 |
| Efficient Polyhedral Gravity Modeling in Modern C++ andPython |
1 |
| SICOPOLIS-AD v2: tangent linear and adjoint modelingframework for ice sheet modeling enabled by automatic differentiationtool Tapenade |
1 |
| Tagging Latency Estimator: A Standalone Software forEstimating Latency of Event-Related Potentials in P300-basedBrain-Computer Interfaces |
1 |
| Pooltool: A Python package for realistic billiardssimulation |
1 |
| gotranx: General ODE translator |
1 |
| ngsPETSc: A coupling between NETGEN/NGSolve and PETSc |
1 |
| A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments |
1 |
| qsort R package: A New Tool for Scoring Q-sort Data |
1 |
| Gauss-Radau Small-body Simulator (GRSS): An Open-Source Library for Planetary Defense |
1 |
| PyPO: a Python package for Physical Optics |
1 |
| PDOPT: A Python library for Probabilistic Design spaceexploration and OPTimisation |
1 |
| Seaduck: A python package for Eulerian and Lagrangianinterpolation on ocean datasets |
1 |
| Moran Pycess: a Python package to simulate Moran processes driven by game theory |
1 |
| fib-tf: A TensorFlow-based Cardiac Electrophysiology Simulator |
1 |
| coxeter: A Python package for working with shapes |
1 |
| Kinematics-vis: A Visualization Tool for the Mathematics of Human Motion |
1 |
| gamut: A Geospatial R Package to Analyze Multisectoral Urban Teleconnections |
1 |
| JeFaPaTo - A joint toolbox for blinking analysis andfacial features extraction |
1 |
| Hardware-Control: Instrument control and automationpackage |
1 |
| Viash: A meta-framework for building reusable workflowmodules |
1 |
| aweSOM: a CPU/GPU-accelerated Self-organizing Map and Statistically Combined Ensemble Framework for Machine-learning Clustering Analysis |
1 |
| PyOrthanc: A Python Interface for Orthanc DICOM Servers |
1 |
| Generative DAGs as an Interface Into ProbabilisticProgramming with the R Package causact |
1 |
| pyneqsys: Solve symbolically defined systems of non-linear equations numerically |
1 |
| Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations |
1 |
| Gravity: Estimation Methods for Gravity Models in R |
1 |
| harmonize-wq: Standardize, clean and wrangle WaterQuality Portal data into more analytic-ready formats |
1 |
| ddop: A python package for data-driven operations management |
1 |
| ollamar: An R package for running large language models |
1 |
| Multitaper.jl: A Julia package for frequency domain analysis of time series |
1 |
| RingsPy: A Python package for Voronoi mesh generationof cellular solids with radial growth pattern |
1 |
| rmap: An R package to plot and compare tabular data oncustomizable maps across scenarios and time |
1 |
| statemodify: a Python framework to facilitateaccessible exploratory modeling for discovering droughtvulnerabilities |
1 |
| pDEMtools: conveniently search, download, and processArcticDEM and REMA products |
1 |
| TorchSurv: A Lightweight Package for Deep Survival Analysis |
1 |
| Analysis of Prehistoric Iconography with the R package iconr |
1 |
| datasailr - An R Package for Row by Row Data Processing, Using DataSailr Script |
1 |
| CoastalLens: A MATLAB UAV Video Stabilization &Rectification Framework |
1 |
| SigCorr: A Python package for studies of trialsfactors |
1 |
| Copulas.jl: A fully Distributions.jl-compliant copulapackage |
1 |
| seesus: a social, environmental, and economicsustainability classifier for Python |
1 |
| pide: Petrophysical Interpretation tools for geoDynamic Exploration. |
1 |
| startinpy: A Python library for modelling andprocessing 2.5D triangulated terrains |
1 |
| osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model |
1 |
| target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files. |
1 |
| flory: A Python package for finding coexisting phases in multicomponent mixtures |
1 |
| Peacock.jl: Photonic crystals in Julia |
1 |
| walkr: MCMC Sampling from Non-Negative Convex Polytopes |
1 |
| The nnlib2 library and nnlib2Rcpp R package for implementing neural networks |
1 |
| OpenSCM Two Layer Model: A Python implementation of the two-layer climate model |
1 |
| NeuNorm: Neutron Imaging Normalization Library |
1 |
| CRED: a rapid peak caller for Chem-seq data |
1 |
| FSharpGephiStreamer: An idiomatic bridge between F# and network visualization |
1 |
| qtl2pleio: Testing pleiotropy vs. separate QTL in multiparental populations |
1 |
| Comet Time Series Visualizer: CometTS |
1 |
| BiGGer: A Model Transformation Tool written in Java forBigraph Rewriting in GrGen.NET |
1 |
| GWPopulation: Hardware agnostic population inference for compact binaries and beyond |
1 |
| unifir: A Unifying API for Working with Unity inR |
1 |
| bayes-toolbox: A Python package for Bayesianstatistics |
1 |
| NOMAD CAMELS: Configurable Application forMeasurements, Experiments and Laboratory Systems |
1 |
| xCDAT: A Python Package for Simple and Robust Analysisof Climate Data |
1 |
| Lexedata: A toolbox to edit CLDF lexicaldatasets |
1 |
| CGC: a Scalable Python Package for Co- andTri-Clustering of Geodata Cubes |
1 |
| fMRIStroke: A preprocessing pipeline for fMRI Data fromStroke patients |
1 |
| dia: An R package for the National Oceanic and Atmospheric Administration dam impact analysis |
1 |
| The Biddy BDD package |
1 |
| widgyts: Custom Jupyter Widgets for Interactive Data Exploration with yt |
1 |
| MParT: Monotone Parameterization Toolkit |
1 |
| MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language |
1 |
| Sports2D: Compute 2D human pose and angles from a videoor a webcam |
1 |
| CMinx: A CMake Documentation Generator |
1 |
| FaaSr: R Package for Function-as-a-Service CloudComputing |
1 |
| Speakerbox: Few-Shot Learning for SpeakerIdentification with Transformers |
1 |
| JCOL: A Java package for solving the graph coloring problem |
1 |
| pygen-structures: A Python package to generate 3D molecular structures for simulations using the CHARMM forcefield |
1 |
| dml: Distance Metric Learning in R |
1 |
| robot_collision_checking: A Lightweight ROS 2 Interface to FCL (Flexible Collision Library) |
1 |
| PyNM: a Lightweight Python implementation of NormativeModeling |
1 |
| DIANNA: Deep Insight And Neural NetworkAnalysis |
1 |
| teiphy: A Python Package for Converting TEI XMLCollations to NEXUS and Other Formats |
1 |
| pyndl: Naïve Discriminative Learning in Python |
1 |
| ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis |
1 |
| ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes |
1 |
| DiscreteEntropy.jl: Entropy Estimation of DiscreteRandom Variables with Julia |
1 |
| MeMC: A package for Monte Carlo simulations ofspherical shells |
1 |
| HARDy: Handling Arbitrary Recognition of Data inPython |
1 |
| sweater: Speedy Word Embedding Association Test andExtras Using R |
1 |
| OMEGA-Py: Python Tools for OMEGA Data |
1 |
| xphyle: Extraordinarily simple file handling |
1 |
| reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome |
1 |
| DYCO: A Python package to dynamically detect and compensate for time lags in ecosystem time series |
1 |
| excluder: An R package that checks for exclusion criteria in online data |
1 |
| ParticlePhaseSpace: A python package for streamlinedimport, analysis, and export of particle phase space data |
1 |
| Bidsme: expandable BIDS-ifier of brain imagerydatasets |
1 |
| WDPM: the Wetland DEM Ponding Model |
1 |
| quadkeyr: Tools for converting QuadKey-identifieddatasets (Microsoft’s Bing Maps Tile System) into raster images andanalyzing Meta (Facebook) Mobility Data |
1 |
| Rclean: A Tool for Writing Cleaner, More Transparent Code |
1 |
| TransitionsInTimeseries.jl: A performant, extensibleand reliable software for reproducible detection and prediction oftransitions in timeseries |
1 |
| A tool for qualitative data analysis designed tosupport computational thinking |
1 |
| A flexible search system for high-accuracy identification of biological entities and molecules |
1 |
| polyCub: An R package for Integration over Polygons |
1 |
| memochange: An R package for estimation procedures and tests for persistent time series |
1 |
| NCDatasets.jl: a Julia package for manipulating netCDFdata sets |
1 |
| tRIBS v5.2: A multi-resolution, parallel platform fortributary hydrology in forest applications |
1 |
| The Geodynamic World Builder: A planetary structurecreator for the geosciences |
1 |
| InsarViz: An open source Python package for theinteractive visualization of satellite SAR interferometry data |
1 |
| Variational Solvers for Irreversible EvolutionarySystems |
1 |
| hetGPy: Heteroskedastic Gaussian Process Modeling in Python |
1 |
| pyQCM-BraTaDio: A tool for visualization, data mining,and modelling of Quartz crystal microbalance with dissipationdata |
1 |
| nnTensor: An R package for non-negative matrix/tensordecomposition |
1 |
| Snek5000: a new Python framework for Nek5000 |
1 |
| Simulated Diffusion in Realistic Imaging Features ofTissue (Sim-DRIFT) |
1 |
| ComFiT: a Python library for computational field theorywith topological defects |
1 |
| Mat-dp: An open-source Python model for analysingmaterial demand projections and their environmental implications, whichresult from building low-carbon systems. |
1 |
| DREiMac: Dimensionality Reduction withEilenberg-MacLane Coordinates |
1 |
| Dynamax: A Python package for probabilistic state space modeling with JAX |
1 |
| ivporbit:An R package to estimate the instrumental variables probit model |
1 |
| Symfem: a symbolic finite element definition library |
1 |
| Pyret: A Python package for analysis of neurophysiology data |
1 |
| simpleCache: R caching for reproducible, distributed, large-scale projects |
1 |
| The jagstargets R package: a reproducible workflow framework for Bayesian data analysis with JAGS |
1 |
| bioLEC: A Python package to measure Landscape Elevational Connectivity |
1 |
| Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer |
1 |
| RECOLO: A Python package for the reconstruction ofsurface pressure loads from kinematic fields using the virtual fieldsmethod |
1 |
| rGUIDANCE – alignment confidence score computation in R |
1 |
| AgriFoodPy: a package for modelling foodsystems |
1 |
| CRNPy: An Open-Source Python Library for Cosmic-RayNeutron Probe Data Processing |
1 |
| parafields: A generator for distributed, stationaryGaussian processes |
1 |
| SolarSpatialTools: A Python package for spatial solarenergy analyses |
1 |
| CTSEG: A segment picture quantum impurity solver based on TRIQS |
1 |
| Sigma: Uncertainty Propagation for C++ |
1 |
| CART: A Tool for Making Paper Relevancy ScreeningEasier |
1 |
| sorn: A Python package for Self Organizing Recurrent Neural Network |
1 |
| home2park: An R package to assess the spatial provision of urban parks |
1 |
| Application Skeleton: Generating Synthetic Applications for Infrastructure Research |
1 |
| Git-RDM: A research data management plugin for the Git version control system |
1 |
| PDLSM-FEM: Solver of Coupled Peridynamics Least Squares Minimization with Finite Element Method |
1 |
| pyEQUIB Python Package, an addendum to proEQUIB: IDL Library for Plasma Diagnostics and Abundance Analysis |
1 |
| MDCraft: A Python assistant for performing andanalyzing molecular dynamics simulations of soft matter systems |
1 |
| Teaspoon: A Python Package for Topological Signal Processing |
1 |
| Mayawaves: Python Library for Interacting with theEinstein Toolkit and the MAYA Catalog |
1 |
| BridgeStan: Efficient in-memory access to the methodsof a Stan model |
1 |
| interflow: A Python package to organize, calculate, andvisualize sectoral interdependency flow data |
1 |
| clustertools: A Python Package for Analyzing StarCluster Simulations |
1 |
| Simulation Decomposition in Python |
1 |
| scribl: A system for the semantic capture ofrelationships in biological literature |
1 |
| mmrefpoints: Projecting long-term marine mammalabundance with bycatch |
1 |
| inAccessMod: An R package to automate data downloadingand processing for AccessMod |
1 |
| eva3dm: A R-package for model evaluation of 3D weather and air quality models |
1 |
| spiketools: a Python package for analyzing single-unitneural activity |
1 |
| OrbDot: A Python package for studying the secular evolution of exoplanet orbits |
1 |
| Elephas: Distributed Deep Learning with Keras &Spark |
1 |
| ChiRP: Chinese Restaurant Process Mixtures for Regression and Clustering |
1 |
| hammurabi X: a C++ package for simulating Galactic emissions |
1 |
| microPIECE - microRNA pipeline enhanced by CLIP experiments |
1 |
| SubZero: a discrete element sea ice model thatsimulates floes as evolving concave polygons |
1 |
| plotastic: Bridging Plotting and Statistics inPython |
1 |
| Rainbow: Automated Air-Liquid Interface Cell CultureAnalysis Using Deep Optical Flow |
1 |
| THzTools: data analysis software for terahertztime-domain spectroscopy |
1 |
| nrt: operational monitoring of satellite imagetime-series in Python |
1 |
| MapReader: Open software for the visual analysis ofmaps |
1 |
| arcos and arcospy: R and Python packages for accessing the DEA ARCOS database from 2006 - 2014 |
1 |
| A Short Introduction to PF: A C++ Library for Particle Filtering |
1 |
| High-Dimensional Integrator |
1 |
| KALMUS: tools for color analysis of films |
1 |
| The SAGE Rejected Article Tracker |
1 |
| YAD: A Learning-based Inductive Logic Programming Tool |
1 |
| BoltzMM: an R package for maximum pseudolikelihood estimation of fully-visible Boltzmann machines |
1 |
| VCC: A framework for building containerized reproducible cluster software environments |
1 |
| fars_cleaner: A Python package for downloading andpre-processing vehicle fatality data in the US |
1 |
| SWAMPE: A Shallow-Water Atmospheric Model in Python forExoplanets |
1 |
| BoARIO: A Python package implementing the ARIO indirecteconomic cost model |
1 |
| cuallee: A Python package for data quality checksacross multiple DataFrame APIs |
1 |
| servir-aces: A Python Package for Training MachineLearning Models for Remote Sensing Applications |
1 |
| ViMag: A Visual Vibration Analysis Toolbox |
1 |
| Molearn: a Python package streamlining the design ofgenerative models of biomolecular dynamics |
1 |
| mikecalsetup: an open-source python tool forautomatically creating calibration setups of MIKE SHE models in PEST orOSTRICH |
1 |
| WorldDynamics.jl: A Julia Package for Developing andSimulating Integrated Assessment Models |
1 |
| Automatic Computation for Robot Design (ACRoD): APython package for numerical calculation of Jacobian of a robot at agiven configuration around a specified end-effector point |
1 |
| pref_voting: The Preferential Voting Tools package for Python |
1 |
| DataInterpolations.jl: Fast Interpolations of 1Ddata |
1 |
| diverse-seq: an application for alignment-free selecting and clustering biological sequences |
1 |
| popkinmocks: mock IFU datacubes for modelling stellarpopulations and kinematics |
1 |
| regional-mom6: A Python package for automatic generation of regional configurations for the Modular Ocean Model 6 |
1 |
| AuDoLab: Automatic document labelling and classification for extremely unbalanced data |
1 |
| AXITOM: A Python package for reconstruction of axisymmetric tomograms acquired by a conical beam |
1 |
| ggparliament: A ggplot2 extension for parliament plots in R |
1 |
| PRDA: An R package for Prospective and Retrospective Design Analysis |
1 |
| JPhyloRef: a tool for testing and resolving phyloreferences |
1 |
| finreportr: Financial Data from U.S. Securities and Exchange Commission |
1 |
| Finnish Media Scrapers |
1 |
| HOHQMesh: An All Quadrilateral/Hexahedral Unstructured Mesh Generator for High Order Elements |
1 |
| SeqPanther: Sequence manipulation and mutationstatistics toolset |
1 |
| onsetsync: An R Package for Onset SynchronyAnalysis |
1 |
| lintsampler: Easy random sampling via linearinterpolation |
1 |
| Sinaps: A Python library to simulate voltage dynamicsand ionic electrodiffusion in neurons |
1 |
| CM++ - A Meta-method for Well-Connected CommunityDetection |
1 |
| skedm: Empirical Dynamic Modeling |
1 |
| MiTfAT: A Python-based Analysis Tool for Molecular fMRI Experiments. |
1 |
| registr 2.0: Incomplete Curve Registration for Exponential Family Functional Data |
1 |
| MicroBenthos: a modeling framework for microbial benthic ecology |
1 |
| nnde: A Python package for solving differential equations using neural networks |
1 |
| BAMnostic: an OS-agnostic toolkit for genomic sequence analysis |
1 |
| egobox, a Rust toolbox for efficient globaloptimization |
1 |
| aion: An R Package to Represent Archaeological TimeSeries |
1 |
| Reference Point Calculator (RPC): A Shiny app forexploration of limit reference points for fisheries management |
1 |
| cstag and cstag-cli: tools for manipulating andvisualizing cs tags |
1 |
| Equilipy: a python package for calculating phaseequilibria |
1 |
| State-Averaged Orbital-Optimized VQE: A quantumalgorithm for the democratic description of ground and excitedelectronic states |
1 |
| pyveg: A Python package for analysing the time evolution of patterned vegetation using Google Earth Engine |
1 |
| SpectralModel: a high-resolution framework forpetitRADTRANS 3 |
1 |
| AHGestimation: An R package for computing robust, masspreserving hydraulic geometries and rating curves |
1 |
| citesdb: An R package to support analysis of CITES Trade Database shipment-level data |
1 |
| UncertainData.jl: a Julia package for working with measurements and datasets with uncertainties. |
1 |
| PyGRB: A pure Python gamma-ray burst analysis package. |
1 |
| PyGeoPressure: Geopressure Prediction in Python |
1 |
| tacmagic: Positron emission tomography analysis in R |
1 |
| pyopmspe11: A Python framework using OPM Flow for the SPE11 benchmark project |
1 |
| ticktack: A Python package for carbon boxmodelling |
1 |
| jaxKAN: A unified JAX framework for Kolmogorov-Arnold Networks |
1 |
| starry_process: Interpretable Gaussian processes for stellar light curves |
1 |
| Curifactory: A research experiment manager |
1 |
| The Pulsar Signal Simulator: A Python package for simulating radio signal data from pulsars |
1 |
| BisPy: Bisimulation in Python |
1 |
| RHRT: An R package to assess Heart Rate Turbulence |
1 |
| feign: a Python package to estimate geometric efficiency in passive gamma spectroscopy measurements of nuclear fuel |
1 |
| Parent-map: analysis of parental contributions to evolved or engineered protein or DNA sequences |
1 |
| Pybehave: a hardware agnostic, Python-based frameworkfor controlling behavioral neuroscience experiments |
1 |
| HNN-core: A Python software for cellular andcircuit-level interpretation of human MEG/EEG |
1 |
| QSOnic: fast quasar continuum fitting |
1 |
| Generating synthetic star catalogs from simulated datafor next-gen observatories with py-ananke |
1 |
| The sspm R package for spatially-explicit surplusproduction population models |
1 |
| lavaanExtra: Convenience Functions for Packagelavaan |
1 |
| ChainoPy: A Python Library for Discrete Time MarkovChain Based Stochastic Analysis |
0 |
| DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections |
0 |
| An Open-Source Tool for Generating Domain-SpecificAccelerators for Resource-Constrained Computing |
0 |
| Caliban: Docker-based job manager for reproducible workflows |
0 |
| uJVM: Lightweight Java Virtual Machine for embedded systems |
0 |
| OpenEPSim: An Open Exclusion Process Simulation Tool |
0 |
| Mashpit: sketching out genomic epidemiology |
0 |
| ESAT: Environmental Source Apportionment Toolkit Python package |
0 |
| validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools |
0 |
| XCALibre.jl: A Julia XPU unstructured finite volume Computational Fluid Dynamics library |
0 |
| GridTest: testing and metrics collection for Python |
0 |
| rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering |
0 |
| VibIR-Parallel-Compute: Enhancing Vibration and Infrared Analysis in High-Performance Computing Environments |
0 |
| EphemerisSources.jl: Idiomatic Ephemeris Sourcing andParsing in Julia |
0 |
| lbh15: a Python package for standard use andimplementation of physical data of heavy liquid metals used in nuclearreactors |
0 |
| PhyloX: A Python package for complete phylogeneticnetwork workflows |
0 |
| PyXAB - A Python Library for -Armed Banditand Online Blackbox Optimization Algorithms |
0 |
| Atramhasis: An online SKOS vocabulary editor |
0 |
| PyExperimenter: Easily distribute experiments and trackresults |
0 |
| pycoxmunk: A python package for computing sea surfacereflectance |
0 |
| Spikeometric: Linear Non-Linear Cascade Spiking NeuralNetworks with Pytorch Geometric |
0 |
| ddtlcm: An R package for overcoming weak separation inBayesian latent class analysis via tree-regularization |
0 |
| ClassiPyGRB: Machine Learning-Based Classification andVisualization of Gamma Ray Bursts using t-SNE |
0 |
| MDPSolver: An Efficient Solver for Markov Decision Processes |
0 |
| RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics |
0 |
| Credit Default Swaps with R |
0 |
| RadGEEToolbox: Streamlined Multispectral & SAR Analysis for Google Earth Engine |
0 |
| spatPomp: An R package for spatiotemporal partially observed Markov process models |
0 |
| DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology |
0 |
| OpenPelt: Python Framework for ThermoelectricTemperature Control System Development |
0 |
| strucscan: A lightweight Python-based framework forhigh-throughput material simulation |
0 |
| openmpp: An R package for dynamic microsimulation modeling using OpenM++ |
0 |
| surtvep: An R package for estimating time-varyingeffects |
0 |
| DEPP - Differential Evolution Parallel Program |
0 |
| DataDepsGenerators.jl: making reusing data easy by automatically generating DataDeps.jl registration code |
0 |
| SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities |
0 |
| subMALDI: an open framework R package for processing irregularly-spaced mass spectrometry data |
0 |
| scene_synthesizer: A Python Library for Procedural Scene Generation in Robot Manipulation |
0 |
| omock: A R package for Mock Data Generation for the Observational Medical Outcomes Partnership Common Data Model |
0 |
| PyStack3D: A python package for fast image stackcorrection |
0 |
| DistriFS: A Platform and User Agnostic Approach toDataset Distribution |
0 |
| bonsai_ipcc - a Python package for the calculation ofnational greenhouse gas inventories |
0 |
| helayo: Reconstructing Sanskrit texts from manuscriptwitnesses |
0 |
| portalcasting: Supporting automated forecasting of rodent populations |
0 |
| SwiftPol: A Python package for building and parameterizing in silico polymer systems |
0 |
| Solar Data Tools: a Python library for automated analysis of unlabeled PV data |
0 |
| RISE: An R package for RISE analysis |
0 |
| bor: An R Package for Transforming Behavioral Observation Records into Data Matrices |
0 |
| Nominally: A Name Parser for Record Linkage |
0 |
| Reel1.0 - A visualization tool for evaluating powder diffraction refinements |
0 |
| MMM: A C++ library for simulating large herbivores |
0 |
| rsudp: A Python package for real-time seismic monitoring with Raspberry Shake instruments |
0 |
| TraitDB: Web application database of phenotypic trait data. |
0 |
| Translational Informatics Management System (TIMS): Towards OMICS based clinical data management for long term curation of clinical studies |
0 |
| Eclipse Golo |
0 |
| ppdiag: Diagnostic Tools for Temporal Point Processes |
0 |
| WaveletsExt.jl: Extending the boundaries of wavelets in Julia |
0 |
| DVRlib: A C++ library for geometric mesh improvement using Directional Vertex Relaxation |
0 |
| MicroTracker.jl: A Julia package for microbotresearch |
0 |
| CNearest: A C++ toolkit to use the nearest-neighbour method of regularised stokeslets algorithm to solve viscous flow problems |
0 |
| BayesReconPy: A Python package for forecast reconciliation |
0 |
| sleev: An R Package for Semiparametric Likelihood Estimation with Errors in Variables |
0 |
| SDA: a symbolic differential algebra package in C++ |
0 |
| AutoEmulate: A Python package for semi-automated emulation |
0 |
| idf-analysis: Heavy rainfall intensity as a function of duration and return period |
0 |
| pyMechT: A Python package for mechanics of soft tissues |
0 |
| QuaC: A Pipeline Implementing Quality Control BestPractices for Genome Sequencing and Exome Sequencing Data |
0 |
| Shiny tools for management rules: interactiveapplications that aid in conservation strategies for North Atlanticright whales |
0 |
| DataScribe: An Omeka S module for structured datatranscription |
0 |
| dcTensor: An R package for discrete matrix/tensordecomposition |
0 |
| Arabica: A Python package for exploratory analysis oftext data |
0 |
| carbonr: An R Package for Estimating Carbon-EquivalentEmissions |
0 |
| TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia |
0 |
| Syd: A package for making interactive data visualizations in python |
0 |
| AtomNeb Python Package, an addendum to AtomNeb: IDL Library for Atomic Data of Ionized Nebulae |
0 |
| Cine: Line excitation by infrared fluorescence in cometary atmospheres |
0 |
| root_numpy: The interface between ROOT and NumPy |
0 |
| PXO (Poly-XTAL Operations): MATLAB Codebase to Generate, Analyse and Export Complex 2D Spatio-Temporally Gradient Grain Structures |
0 |
| bwsample: Processing Best-Worst Scaling data |
0 |
| lhorizon: geometry and targeting via JPL Horizons |
0 |
| Estimating statistics from multi-state models using simulation with multistateutils |
0 |
| hotsub: A batch job engine for cloud services with ETL framework |
0 |
| HyperNaut: a navigator for the hyperbolic plane |
0 |
| gLBM: A GPU enabled Lattice Boltzmann Method Library |
0 |
| pyscses: a PYthon Space-Charge Site-Explicit Solver |
0 |
| Taxonomy Resolver: A Python package for building and filtering taxonomy trees |
0 |
| AirFogSim: A Python Package for Benchmarking Collaborative Intelligence in Low-Altitude Vehicular Fog Computing |
0 |
| wmpy-power: A Python package for process-based regionalhydropower simulation |
0 |
| PDR: The Planetary Data Reader |
0 |
| Accelerating Parallel Operation for Compacting SelectedElements on GPUs |
0 |
| Multiple Inference: A Python package for comparingmultiple parameters |
0 |
| PDENLPModels.jl: An NLPModel API for OptimizationProblems with PDE-Constraints |
0 |
| Bluebonnet: Scaling solutions for production analysisfrom unconventional oil and gas wells |
0 |
| PyRolL - An Extensible OpenSource Framework for RollingSimulation |
0 |
| BibDedupe: An Open-Source Python Library forBibliographic Record Deduplication |
0 |
| GMP-Featurizer: A parallelized Python package forefficiently computing the Gaussian Multipole features of atomicsystems |
0 |
| Pyafscgap.org: Open source multi-modal Python-basedtools for NOAA AFSC RACE GAP |
0 |
| hillmaker: A Python package for occupancy analysis indiscrete entity flow systems |
0 |
| omni-fig: Unleashing Project Configuration andOrganization in Python |
0 |
| UQTestFuns: A Python3 library of uncertaintyquantification (UQ) test functions |
0 |
| LIBSsa: an open source software for analyzing LIBSspectra |
0 |
| naturf: a package for generating urban parameters fornumerical weather modeling |
0 |
| AIgarMIC: a Python package for automated interpretationof agar dilution minimum inhibitory concentration assays |
0 |
| HealpixMPI.jl: an MPI-parallel implementation of theHealpix tessellation scheme in Julia |
0 |
| JAXbind: Bind any function to JAX |
0 |
| Vector: JIT-compilable mathematical manipulations of ragged Lorentz vectors |
0 |
| volesti: A C++ library for sampling and volume computation on convex bodies |
0 |
| strauss: Sonification Tools and Resources for Analysis Using Sound Synthesis |
0 |
| kokkos-fft: A shared-memory FFT for the Kokkos ecosystem |
0 |
| PolytopeWalk: Sparse MCMC Sampling over Polytopes |
0 |
| CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows |
0 |
| hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications |
0 |
| [ |
SWEpy: A Python Library for Quick and Easy Access and Manipulation of MEaSUREs CETB Files for SWE Analysis](https://doi.org/10.21105/joss.01018) |
| arcesetc: ARC Echelle Spectrograph Exposure Time Calculator |
0 |
| SeroTools: a Python package for Salmonella serotype data analysis |
0 |
| bayes_traj: A Python package for Bayesian trajectory analysis |
0 |
| eo-tides: Tide modelling tools for large-scale satellite Earth observation analysis |
0 |
| skipTrack: An R package for Identifying Skips inSelf-Tracked Mobile Menstrual Cycle Data |
0 |
| LocalCop: An R package for local likelihood inferencefor conditional copulas |
0 |
| cgeniepy: A Python package for analysing cGENIE EarthSystem Model output |
0 |
| SenAOReFoc: A Closed-Loop Sensorbased Adaptive Opticsand Remote Focusing Control Software |
0 |
| RELSAD: A Python package for reliability assessment ofmodern distribution systems |
0 |
| Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains |
0 |
| seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies |
0 |
| pridepy: A Python package to download and search data from PRIDE database |
0 |
| eVAS: A user-friendly electronic Visual Analogue Scale |
0 |
| pyuca: a Python implementation of the Unicode Collation Algorithm |
0 |
| multivar_horner: A Python package for computing Horner factorisations of multivariate polynomials |
0 |
| Combining a Probability and a Non-Probability Sample in a Capture-Recapture Setting |
0 |
| PyMS: Python for Mycorrhizal Symbiosis data analysis |
0 |
| Container Tree: Software to Model Container Filesystems, Packages, and Inheritance |
0 |
| cde - R package to retrieve data from the Environment Agency Catchment Data Explorer site |
0 |
| ur-scape: harnessing data for stakeholder participationin city-making processes |
0 |
| PopMedNet: A scalable and extensible open-sourceinformatics platform designed to facilitate the implementation andoperation of distributed health data networks |
0 |
| pypbomb: A Python package with tools for the design ofdetonation tubes |
0 |
| STReNGTHS, a Python package to model and simulatecomplex reaction-diffusion systems |
0 |
| smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX |
0 |
| PyroRL: A Reinforcement Learning Environment for Wildfire Evacuation |
0 |
| The MFrontGallery project |
0 |
| PulPy: A Python Toolkit for MRI RF and Gradient PulseDesign |
0 |
| UltraDark.jl: A Julia package for simulation ofcosmological scalar fields |
0 |
| Computer-Aided Generation of N-shift RWS |
0 |
| One4All: An Open Source Portal to Validate and ShareMicroplastics Data and Beyond |
0 |
| repytah: An Open-Source Python Package for BuildingAligned Hierarchies for Sequential Data |
0 |
| seismolab: A Python package for analyzing space-basedobservations of variable stars |
0 |
| medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R |
0 |
| Lighter: Configuration-Driven Deep Learning |
0 |
| Vivid Volcano: Empowering Non-Bioinformaticians to Analyze Pre-Processed Omics Data |
0 |
| Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi |
0 |
| epimargin: A Toolkit for Epidemiological Estimation, Prediction, and Policy Evaluation |
0 |
| physical_validation: A Python package to assess the physical validity of molecular simulation results |
0 |
| YoungTab |
0 |
| Moltres: finite element based simulation of molten salt reactors |
0 |
| Predihood: an open-source tool for predicting neighbourhoods’ information |
0 |
| Desalination and brine treatment systems integrated modelling framework: simulation and evaluation of water and resource recovery |
0 |
| Snowdrop: Python Package for DSGE Modeling |
0 |
| ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution |
0 |
| rgfrosh: A Python package for calculating shockconditions using real gas equations of state |
0 |
| HinetPy: A Python package for accessing and processingNIED Hi-net seismic data |
0 |
| Pyheartlib: A Python package for processingelectrocardiogram signals |
0 |
| CATS: The Climate Aware Task Scheduler |
0 |
| PyRASA - Spectral parametrization in python based on IRASA |
0 |
| PhenoFeatureFinder: a python package for linkingdevelopmental phenotypes to omics features |
0 |
| dsBinVal: Conducting distributed ROC analysis usingDataSHIELD |
0 |
| SSMSE: An R package for Management Strategy Evaluationwith Stock Synthesis Operating Models |
0 |
| Ciclope: micro Computed Tomography to FiniteElements |
0 |
| PyBWE: Python tools for Bandwidth Extrapolation ofplanetary radar signals |
0 |
| DynamicOED.jl: A Julia package for solving optimumexperimental design problems |
0 |
| NPSdataverse: a suite of R packages for data processing, authoring Ecological Metadata Language metadata, checking data-metadata congruence, and accessing data |
0 |
| OpenHPS: A Modular Framework to Facilitate the Development of FAIR Positioning Systems |
0 |
| substrateminer: A Python package to investigate protein substrate repertoires |
0 |
| xraybinaryorbit: A Python Package for Analyzing Orbital Modulations in X-ray Binaries |
0 |
| PyProBE: Python Processing for Battery Experiments |
0 |
| ginjax: E(d)-Equivariant CNN for Tensor Images |
0 |
| Plotrr: Functions for making visual exploratory data analysis with nested data easier. |
0 |
| TX\(^2\): Transformer eXplainability and eXploration |
0 |
| LaplaceInterpolation.jl: A Julia package for fast interpolation on a grid |
0 |
| OwlDE: making ODEs first-class Owl citizens |
0 |
| madupite: A High-Performance Distributed Solver for Large-Scale Markov Decision Processes |
0 |
| foamlib: A modern Python package for working with OpenFOAM |
0 |
| Analytic continuation component of the GreenX library: robust Padé approximants with symmetry constraints |
0 |
| delfies: a Python package for the detection of DNA breakpoints with neo-telomere addition |
0 |
| QuantumReservoirPy: A Software Package for Time Series Prediction |
0 |
| Vlasiator.jl: A Julia package for processing Vlasiatordata |
0 |
| PyAutoCTI: Open-Source Charge Transfer InefficiencyCalibration |
0 |
| LorenzCycleToolkit: A Comprehensive Python Tool forAnalyzing Atmospheric Energy Cycles |
0 |
| WAVI.jl: Ice Sheet Modelling in Julia |
0 |
| OpenCCM: An Open-Source Continuous CompartmentalModelling Package |
0 |
| Finding and removing introns from RNA-Seq de novoassemblies with IntronSeeker |
0 |
| lintegrate: A C/Python numerical integration libraryfor working in log-space |
0 |
| Tethys: A Spatiotemporal Downscaling Model for GlobalWater Demand |
0 |
| PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades |
0 |
| cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files |
0 |
| Ensight4Matlab: read, process, and write files in EnSight® Gold format from C++ or MATLAB® |
0 |
| Local clustering |
0 |
| GKNAP: A Java and C++ package for solving the multidimensional knapsack problem |
0 |
| anadrofish: Anadromous fish population responses to dams |
0 |
| Geometric nested sampling: sampling from distributions defined on non-trivial geometries |
0 |
| Caffeine: A parallel runtime library for supporting modern Fortran compilers |
0 |
| SpecialFunctions: A C# package of special functions for scientific computing with MATLAB-compatible API |
0 |
| matlab-igraph: bringing igraph to MATLAB |
0 |
| InspectorCell: Finding Ground Truth in MultiplexedMicroscopy Images |
0 |
| smmR: A Semi-Markov R package |
0 |
| ospgrillage: A bridge deck grillage analysispreprocessor for OpenSeesPy |
0 |
| Openseize: A digital signal processing package forlarge EEG datasets in Python |
0 |
| Fast Resampling and Monte Carlo Methods inPython |
0 |
| ELK: A python package for correcting, analyzing, anddiagnosing TESS integrated light curves |
0 |
| mpl-interactions: A Python Package for InteractiveMatplotlib Figures |
0 |
| tehtuner: An R package to fit and tune models for theconditional average treatment effect |
0 |
| BoboCEP: a Fault-Tolerant Complex Event ProcessingEngine for Edge Computing in Internet of Things |
0 |
| primerForge: a Python program for identifying primerpairs capable of distinguishing groups of genomes from eachother |
0 |
| cortecs: A Python package for compressingopacities |
0 |
| Multivariate Covariance Generalized Linear Models inPython: The mcglm library |
0 |
| MACE: a Machine-learning Approach to Chemistry Emulation |
0 |
| bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. |
0 |
| ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates |
0 |
| ConleyDynamics.jl: A Julia package for multivector dynamics on Lefschetz complexes |
0 |
| MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices. |
0 |
| AdditiveFOAM: A Continuum Multiphysics Code for Additive Manufacturing |
0 |
| An easy-to-use p5.js 3D object picker for visual artists |
0 |
| polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories |
0 |
| CGIMP: Real-time exploration and covariate projection for self-organizing map datasets |
0 |
| pycellga: A Python package for improved cellular genetic algorithms |
0 |
| GALAHAD 4.0: an open source library of Fortran packageswith C and Matlab interfaces for continuous optimization |
0 |
| Logodetect: One-shot detection of logos in image andvideo data |
0 |
| Minterpy: multivariate polynomial interpolation in Python |
0 |
| nleis.py: A Nonlinear Electrochemical Impedance Analysis Toolbox |
0 |
| t8code - modular adaptive mesh refinement in the exascale era |
0 |
| popclass: A Python Package for Classifying Microlensing Events |
0 |
| svZeroDSolver: A modular package for lumped-parameter cardiovascular simulations |
0 |
| Soundata: Reproducible use of audio datasets |
0 |
| Evoke: A Python package for evolutionary signallinggames |
0 |
| SPbLA: The Library of GPGPU-powered Sparse BooleanLinear Algebra Operations |
0 |
| NebulaSEM: A high-order discontinuous Galerkin spectralelement code for atmospheric modeling |
0 |
| dsmmR: Estimation and Simulation of DriftingSemi-Markov Models |
0 |
| Micro Manager: a Python package for adaptive andflexible two-scale coupling |
0 |
| G2Aero: A Python package for separable shapetensors |
0 |
| Gibbs Sea Water Oceanographic Toolbox of TEOS-10implemented in Rust |
0 |
| ccviR: an R package and Shiny app to implement theNatureServe Climate Change Vulnerability Index |
0 |
| NAIF PDS4 Bundler: A Python package to generate SPICEPDS4 archives |
0 |
| MARTINI: The Little Match and Replace Tool forAutomatic Code Rewriting |
0 |
| LabelProp: A semi-automatic segmentation tool for 3D medical images |
0 |
| PyBispectra: A toolbox for advanced electrophysiological signal processing using the bispectrum |
0 |
| slap2-utils: Tools for Processing SLAP2 Data |
0 |
| textAnnotatoR: An Interactive Text Annotation Tool with ‘shiny’ GUI |
0 |
| bmm: Bayesian Map-matching |
0 |
| UnfoldMakie.jl: EEG/ERP visualization package |
0 |
| PyCCEA: A Python package of cooperative co-evolutionary algorithms for feature selection in high-dimensional data |
0 |
| set6: R6 Mathematical Sets Interface |
0 |
| tidyqwi: A Tidy Approach to Accessing The US Census Bureau’s Quarterly Workforce Indicators |
0 |
| StoSpa2: A C++ software package for stochastic simulations of spatially extended systems |
0 |
| NcCut: A NetCDF Viewer and Transecting Tool |
0 |
| Algorithms for SEM-EDS Mineral Dust Classification |
0 |
| MicroFloatingPoints.jl: providing very smallIEEE 754-compliant floating-point types |
0 |
| snSMART: An R Package for Small Sample, Sequential,Multiple Assignment, Randomized Trial Data Analysis |
0 |
| openBURST: Real-time air surveillance simulation andanalysis for active and passive sensors |
0 |
| Enlsip.jl: A Julia optimization package to solveconstrained nonlinear least-squares problems |
0 |
| Cellpy – an open-source library for processing andanalysis of battery testing data |
0 |
| HARE: A Python workflow for analyzing genomic featureenrichment in GWAS datasets |
0 |
| sptotal: an R package for predicting totals andweighted sums from spatial data |
0 |
| whalestrike: An R package for simulating ship strikeson whales |
0 |
| PsychoPhysioPipeline: A Processing and AnalysisPipeline for Psychophysiological Research |
0 |
| netroles: A Java library for role equivalence analysisin networks |
0 |
| DeBEIR: A Python Package for Dense Bi-EncoderInformation Retrieval |
0 |
| dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration |
0 |
| CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation |
0 |
| Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data |
0 |
| fastatomstruct: A High-Performance Library for Structural and Dynamical Analysis of Atomic Systems |
0 |
| Salt: Multimodal Multitask Machine Learning for High Energy Physics |
0 |
| lpcde: Estimation and Inference for Local Polynomial Conditional Density Estimators |
0 |
| R-Opitools – An Opinion Analytical Tool for Big Digital Text Document (DTD) |
0 |
| daiR: an R package for OCR with Google Document AI |
0 |
| gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran |
0 |
| PressureDrop.jl: Pressure traverses and gas lift analysis for oil & gas wells |
0 |
| MoSDeF-dihedral-fit: A lightweight software for fitting dihedrals within MoSDeF |
0 |
| statConfR: An R Package for Static Models of Decision Confidence and Metacognition |
0 |
| ndbc-api: Accelerating oceanography and climate science research with Python |
0 |
| RelativisticDynamics.jl: Relativistic Spin-OrbitalDynamics in Julia |
0 |
| caskade: building Pythonic scientific simulators |
0 |
| shipgrav: A Python package for marinegravimetry |
0 |
| Copper: a performance curve generator for buildingenergy simulation |
0 |
| PostcodesioR: An R package for UK geocoding |
0 |
| SLEPLET: Slepian Scale-Discretised Wavelets inPython |
0 |
| RMAVIS v1.0: a Shiny application for the analysis ofvegetation survey data and assignment to GB NVC communities |
0 |
| pyprop8: A lightweight code to simulate seismicobservables in a layered half-space |
0 |
| MRdataset : A unified and user-friendly interface tomedical imaging datasets |
0 |
| MLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPS |
0 |
| PARMESAN: Meteorological Timeseries and TurbulenceAnalysis Backed by Symbolic Mathematics |
0 |
| WunDeeDB.jl: An easy to use, zero config, WAL, SQLite backend vector database |
0 |
| GCol: A High-Performance Python Library for Graph Colouring |
0 |
| ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach |
0 |
| pengWann: Descriptors of chemical bonding from Wannier functions |
0 |
| MultiVae: A Python package for Multimodal Variational Autoencoders on Partial Datasets. |
0 |
| EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms |
0 |
| Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB |
0 |
| FDApy: a Python package for functional data |
0 |
| Magicwand: A platform to provide high-quality, reliable, and reproducible data sets for low-and-slow DDoS attacks. |
0 |
| iRF: extracting interactions from random forests |
0 |
| molic: An R package for multivariate outlier detection in contingency tables |
0 |
| The DynaGUI package |
0 |
| miet: an R package for region of interest analysis from magnetic reasonance images |
0 |
| DeepRiver: A Deep Learning Library for Data Streams |
0 |
| LiGuard: Interactively and Rapidly Create Point-Cloud and Image Processing Pipelines |
0 |
| verdata: An R package for analyzing data from the TruthCommission in Colombia |
0 |
| BayesEoR: Bayesian 21-cm Power Spectrum Estimation fromInterferometric Visibilities |
0 |
| ASGarD: Adaptive Sparse Grid Discretization |
0 |
| superblockify: A Python Package for Automated Generation, Visualization, and Analysis of Potential Superblocks in Cities |
0 |
| AquaCrop.jl: A Process-Based Model of Crop Growth |
0 |
| Turftopic: Topic Modelling with Contextual Representations from Sentence Transformers |
0 |
| Talisman: a JavaScript archive of fuzzy matching, information retrieval and record linkage building blocks |
0 |
| array_split: Multi-dimensional array partitioning |
0 |
| minimo: a linked data and metadata storage system for small labs |
0 |
| Virgo: A Versatile Spectrometer for Radio Astronomy |
0 |
| EDO.js: A comprehensive JavaScript library for interaction with musical set theory in any tuning |
0 |
| QuantEcon.py: A community based Python library forquantitative economics |
0 |
| DeepBench: A simulation package for physical benchmarking data |
0 |
| SSAPy - Space Situational Awareness for Python |
0 |
| SPEI: A Python package for calculating and visualizing drought indices |
0 |
| Osier: A Python package for multi-objective energy system optimization |
0 |
| Limarka: making possible Brazilian students writing dissertation and thesis with Markdown |
0 |
| Jabberwocky: an ontology-aware toolkit for manipulating text |
0 |
| unxt: A Python package for unit-aware computing with JAX |
0 |
| pyCLINE: A Python package using the CLINE method for discovery of nullcline structures in oscillatory dynamics |
0 |
| MFEM/MGIS, a HPC mini-application targeting nonlinear thermo-mechanical simulations of nuclear fuels at mesoscale |
0 |
| SPARC-X-API: Versatile Python Interface for Real-space Density Functional Theory Calculations |
0 |
| MOTrainer: Distributed Measurement Operator Trainer forData Assimilation Applications |
0 |
| gemlog: Data Conversion for the Open-Source GemInfrasound Logger |
0 |
| ER-Evaluation: End-to-End Evaluation of EntityResolution Systems |
0 |
| SIRITVIS: Social Interaction Research Insights TopicVisualisation |
0 |
| Effluent: A Python package for modelling effluentdischarge |
0 |
| ncompare: A Python package for comparing netCDFstructures |
0 |
| CAD_to_OpenMC: from CAD design to particle transport |
0 |
| Enabling the Verification and Formalization of Hybrid Quantum-Classical Computing with OpenQASM 3.0 compatible QASM-TS 2.0 |
0 |
| Go-HEP: libraries for High Energy Physics analyses in Go |
0 |
| NLSIG-COVID19Lab: A modern logistic-growth tool (nlogistic-sigmoid) for descriptively modelling the dynamics of the COVID-19 pandemic process |
0 |
| DAFSA: a Python library for Deterministic Acyclic Finite State Automata |
0 |
| scPCA: A toolbox for sparse contrastive principal component analysis in R |
0 |
| RSeqAn: Headers and wrappers for the SeqAn library in R |
0 |
| deflake.rs: Detect Flaky Tests in Rust Projects using Execution Data |
0 |
| Katsu: A Python package for Mueller and Stokes simulation and polarimetry |
0 |
| MM-PoE: Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models |
0 |
| Executorlib – Up-scaling Python workflows for hierarchical heterogenous high-performance computing |
0 |
| xesn: Echo state networks powered by Xarray andDask |
0 |
| ReLax: Efficient and Scalable Recourse ExplanationBenchmarking using JAX |
0 |
| OpenGeoSysUncertaintyQuantification.jl: a Julia libraryimplementing an uncertainty quantification toolbox forOpenGeoSys |
0 |
| AutoEncoderToolkit.jl: A Julia package for training(Variational) Autoencoders |
0 |
| CN-AeroModels: A C++ implementation of aerodynamicmodels for wind propulsion systems of cargo ships |
0 |
| mamonca: magnetic Monte Carlo code |
0 |
| ADIOS4DOLFINx: A framework for checkpointing inFEniCS |
0 |
| Biotrade: A Python package to access and analyse theinternational trade of bio-based products |
0 |
| Scanbot: An STM Automation Bot |
0 |
| tightbinder: A Python package for semi-empiricaltight-binding models of crystalline and disordered solids |
0 |
| Ipyannotator: the infinitely hackable annotationframework |
0 |
| voice: A Comprehensive R Package for Audio Analysis |
0 |
| COVID-19 Lung Segmentation |
0 |
| ACHR.cu: GPU-accelerated sampling of metabolic networks |
0 |
| Ramble: Parser Combinator for R |
0 |
| Scripts for Easier Use of Spice (SEUS): A Perl script package for simulating and creating batches of circuit netlists for Monte Carlo simulations when using Ngspice or Ngspice-based simulators |
0 |
| SeisModels.jl: A Julia package for models of the Earth’s interior |
0 |
| fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses |
0 |
| SegregatedVMSSolver.jl: Linearized and Segregated Stabilized Solver for Large Eddy Simulation in Julia |
0 |
| D3mirt: Descriptive Three-Dimensional MultidimensionalItem Response Theory for R |
0 |
| VisualTorch: Streamlining Visualization for PyTorchNeural Network Architectures |
0 |
| Fraggler: A Python Package and CLI Tool for AutomatedFragment Analysis |
0 |
| AeroAcoustics.jl: A Julia package foraeroacoustics |
0 |
| TSE: A triple stellar evolution code |
0 |
| tomso: TOols for Models of Stars and theirOscillations |
0 |
| adrt: approximate discrete Radon transform forPython |
0 |
| proteusPy: A Python Package for Protein Structure andDisulfide Bond Modeling and Analysis |
0 |
| Reducing the efforts to create reproducible analysiscode with FieldTrip |
0 |
| DICaugment: A Python Package for 3D Medical ImagingAugmentation |
0 |
| SuperNOVA: Semi-Parametric Identification andEstimation of Interaction and Effect Modification in Mixed Exposuresusing Stochastic Interventions in R |
0 |
| OpenFEPOPS: A Python implementation of the FEPOPSmolecular similarity technique |
0 |
| ParquetDB: A Lightweight Python Parquet-Based Database |
0 |
| Empirical and non-parametric copula models with the cort R package |
0 |
| wolfexplorer: a tool for visualization and exploration of complex multi-year multi-specimen datasets |
0 |
| Py-school-match: Matching algorithms to assign students to schools |
0 |
| 4DModeller: a spatio-temporal modelling package |
0 |
| 3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI |
0 |
| fff_segmenter: A signal segmentation script foracoustic FFF fabrication data in MATLAB |
0 |
| ABSESpy: An agent-based modeling framework forsocial-ecological systems |
0 |
| MultiPrecisionArrays.jl: A Julia package for iterativerefinement |
0 |
| QUPS: A MATLAB Toolbox for Rapid Prototyping ofUltrasound Beamforming and Imaging Techniques |
0 |
| SetVis: Visualizing Large Numbers of Sets andIntersections |
0 |
| SpatialGEV: Fast Bayesian inference for spatial extremevalue models in R |
0 |
| Castellum: A participant management tool for scientificstudies |
0 |
| giotto-deep: A Python Package for Topological DeepLearning |
0 |
| FijiRelax: Fast and noise-corrected estimation of MRIrelaxation maps in 3D + t |
0 |
| Swiftest: An N-body Integrator for GravitationalSystems |
0 |
| autoStreamTree: Genomic variant data fitted togeospatial networks |
0 |
| GPCERF - An R package for implementing Gaussianprocesses for estimating causal exposure response curves |
0 |
| EKF_CAL: Extended Kalman Filter-based Calibration and Localization |
0 |
| EPICpy: A Python Interface for EPIC ComputationalCognitive Modeling |
0 |
| BlueCelluLab: Biologically Detailed Neural NetworkExperimentation API |
0 |
| diwanalr: An R data analysis package for diffusing-wave spectroscopy |
0 |
| IBCAO_py: A matplotlib library for using the International Bathymetric Chart of the Arctic Ocean with cartopy and matplotlib |
0 |
| adaptest: Data-Adaptive Statistics for High-Dimensional Testing in R |
0 |
| CR-Sparse: Hardware accelerated functional algorithms for sparse signal processing in Python using JAX |
0 |
| GMSimViz: Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools (GMT) |
0 |
| Torsional Axisymmetric Core Oscillations Visualiser (TACO-VIS): A Python module for animating torsional wave data for fluid planetary cores |
0 |
| passt: An R implementation of the Probability Associator Time (PASS-T) model |
0 |
| Visions: An Open-Source Library for Semantic Data |
0 |
| jax-smfsb: A Python library for stochastic systems biology modelling and inference |
0 |
| PyForestScan: A Python library for calculating forest structural metrics from lidar point cloud data |
0 |
| solids4foam: A toolbox for performing solid mechanics and fluid-solid interaction simulations in OpenFOAM |
0 |
| CycloPhaser: A Python Package for Detecting Extratropical Cyclone Life Cycles |
0 |
| antimeridian: A Python package for correcting geometries that cross the 180th meridian |
0 |
| DiffOpt: Parallel optimization of Jax models |
0 |
| TrixiParticles.jl: Particle-based multiphysics simulation in Julia |
0 |
| BART-Survival: A Bayesian machine learning approach to survival analyses in Python |
0 |
| MarSwitching.jl: A Julia package for Markov switchingdynamic models |
0 |
| dwctaxon, an R package for editing and validatingtaxonomic data in Darwin Core format |
0 |
| STITCHES: a Python package to amalgamate existing Earthsystem model output into new scenario realizations |
0 |
| PyHeatDemand - Processing Tool for Heat DemandData |
0 |
| The plebeian Graph Library: A WebGL based network visualisation and diagnostics package |
0 |
| guitarsounds: A Python package to visualize harmonicsounds for musical instrument design |
0 |
| QuaCa: an open-source library for fast calculations ofsteady-state quantum friction |
0 |
| spgrep: On-the-fly generator of space-group irreducible representations |
0 |
| GRAPL: A computational library for nonparametricstructural causal modelling, analysis and inference |
0 |
| PyNGHam: A Python library of the NGHam protocol |
0 |
| kifmm-rs: A Kernel-Independent Fast Multipole Framework in Rust |
0 |
| FRAGMENT-MNP: A model of micro- and nanoplastic fragmentation in the environment |
0 |
| AniSOAP: Machine Learning Representations for Coarse-grained and Non-spherical Systems |
0 |
| TASOPT.jl: A Julia package for conceptual commercial transport aircraft design |
0 |
| scmorph: a Python package for analysing single-cell morphological profiles |
0 |
| OperationsResearchModels.jl: A Julia package for operations research models |
0 |
| CurvilinearGrids.jl: A Julia package for curvilinear coordinate transformations |
0 |
| DetectorChecker: analyzing patterns of defects in detector screens |
0 |
| TidyTensor: Utilities for multidimensional arrays as named hierarchical structures |
0 |
| Delve: Neural Network Feature Variance Analysis |
0 |
| modeLLtest: An R Package for Unbiased Model Comparison using Cross Validation |
0 |
| neurone_loader: A Python module for loading EEG data recorded with Bittium NeurOne |
0 |
| plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels |
0 |
| SimSGamE : Scheduling simulator for modern gameengines |
0 |
| BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS |
0 |
| DiffeRT2d: A Differentiable Ray Tracing PythonFramework for Radio Propagation |
0 |
| KerrGeoPy: A Python Package for Computing TimelikeGeodesics in Kerr Spacetime |
0 |
| Statmanager-kr: A User-friendly Statistical Package forPython in Pandas |
0 |
| Umami: A Python toolkit for jet flavour tagging |
0 |
| GIRFReco.jl: An Open-Source Pipeline for SpiralMagnetic Resonance Image (MRI) Reconstruction in Julia |
0 |
| Foam: A Python package for forward asteroseismicmodelling of gravity modes |
0 |
| EllipticForest: A Direct Solver Library for EllipticPartial Differential Equations on Adaptive Meshes |
0 |
| OpenTTDLab: A Python framework for reproducible experiments using OpenTTD |
0 |
| Gyselalib++: A Portable C++ Library for Semi-Lagrangian Kinetic and Gyrokinetic Simulations |
0 |
| Condor, a mathematical modeling framework for engineers with deadlines |
0 |
| Samewords: Automatic word disambigation in critical text editions |
0 |
| Representation and Manipulation of Genomic Tuples in R |
0 |
| bíogo/ncbi: interfaces to NCBI services for the Go language |
0 |
| electiondata: a Python package for consolidating, checking, analyzing, visualizing and exporting election results |
0 |
| RL: Generic reinforcement learning codebase in TensorFlow |
0 |
| The Causal Testing Framework |
0 |
| CompressedBeliefMDPs.jl: A Julia Package for Solving Large POMDPs with Belief Compression |
0 |
| AI-ANNE: (A) (N)eural (N)et for (E)xploration |
0 |
| MPTRAC: A high-performance Lagrangian transport model for atmospheric air parcel dispersion |
0 |
| GNOLL: Efficient Multi-Lingual Software for Real-WorldDice Notation and Extensions |
0 |
| pysr3: A Python Package for Sparse Relaxed RegularizedRegression |
0 |
| fRAT: an interactive, Python-based tool forregion-of-interest summaries of functional imaging data |
0 |
| Motorcycle: A spectral boundary-integral method forseismic cycles on multiple faults |
0 |
| ReSurfEMG: A Python library for preprocessing andanalysis of respiratory EMG. |
0 |
| LinkingLines: Using the Hough Transform to Cluster LineSegments and Mesoscale Feature Extraction |
0 |
| hilbertmodgroup: Reduction algorithms and framework forHilbert Modular Groups |
0 |
| greeks: Sensitivities of Prices of Financial Optionsand Implied Volatilities |
0 |
| Pherosensor-toolbox: a Python package forBiology-Informed Data Assimilation |
0 |
| EchemFEM: A Firedrake-based Python package forelectrochemical transport |
0 |
| OptiCommPy: Open-source Simulation of Fiber OpticCommunications with Python |
0 |
| PySymmPol - Symmetric Polynomials |
0 |
| DeepHyper: A Python Package for Massively Parallel Hyperparameter Optimization in Machine Learning |
0 |
| VoteKit: A Python package for computational social choice research |
0 |
| ropenblas: Download, Compile and Link OpenBLAS Library with R |
0 |
| h5fortran: object-oriented polymorphic Fortran interface for HDF5 file IO |
0 |
| datastructures: An R package for organisation and storage of data |
0 |
| ipc: An R Package for Inter-process Communication |
0 |
| EMViz (Early Music Visualization): MATLAB runtime application |
0 |
| Tenta: Remote and Real-Time Sensor Network Management |
0 |
| The 3D Slicer RVXLiverSegmentation plug-in forinteractive liver anatomy reconstruction from medical images |
0 |
| StreamGen: a Python framework for generating streams of labeled data |
0 |
| GORILLA: Guiding-center ORbit Integration with LocalLinearization Approach |
0 |
| Fastsubtrees: simple and efficient subtrees extractionsin Python with applications to NCBI taxonomy |
0 |
| localcovid19now: processing and mapping COVID-19 casedata at subnational scales |
0 |
| Rosalution: Supporting data accessibility, integration,curation, interoperability, and reuse for precision animalmodeling |
0 |
| CNATool - Complex Network Analysis Tool |
0 |
| nimCSO: A Nim package for Compositional SpaceOptimization |
0 |
| concstats: Market Structure, Concentration and Inequality Measures, with R |
0 |
| RidePy: A fast and modular framework for simulatingridepooling systems |
0 |
| gsMAMS: an R package for Designing Multi-ArmMulti-Stage Clinical Trials |
0 |
| Pywaterflood: Well connectivity analysis throughcapacitance-resistance modeling |
0 |
| OpenTerrace: A fast, flexible and extendable Pythonframework for thermal energy storage packed bed simulations |
0 |
| SeqMetrics: a unified library for performance metricscalculation in Python |
0 |
| iTensor: An R package for independent componentanalysis-based matrix/tensor decomposition |
0 |
| PolarToolkit: Python Tools for Convenient,Reproducible, and Open Polar Science |
0 |
| Topography-based surface water modeling in Julia, with support for infiltration and temporal developments |
0 |
| ICAT: The Interactive Corpus Analysis Tool |
0 |
| cellular_raza: Cellular Agent-based Modeling from a Clean Slate |
0 |
| DRDMannTurb: A Python package for scalable, data-drivensynthetic turbulence |
0 |
| ExaDEM: a HPC application based on exaNBody targeting scalable DEM simulations with complex particle shapes |
0 |
| PhaseFieldX: An Open-Source Framework for Advanced Phase-Field Simulations |
0 |
| tempodisco: an R package for temporal discounting |
0 |
| NADI – Network Analysis and Data Integration with a Domain Specific Language |
0 |
| PyPaperRetriever: A Python Tool for Finding and Downloading Scientific Literature |
0 |
| wrenfold: Symbolic code generation for robotics |
0 |
| PyLops-MPI - MPI Powered PyLops with mpi4py |
0 |
| Bayesian model reconstruction based on spectral line observations with pomme |
0 |
| prisonbrief: An R package that returns tidy data from the World Prison Brief website |
0 |
| CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies |
0 |
| pymccrgb: Color- and curvature-based classification of multispectral point clouds in Python |
0 |
| ExTemp: A computational and image-processing suite for extracting temporal barcodes |
0 |
| Potnia: A Python library for the conversion of transliterated ancient texts to Unicode |
0 |
| FTorch: a library for coupling PyTorch models to Fortran |
0 |
| SBIAX: Density-estimation simulation-based inference in JAX |
0 |
| PyPLUTO: a data analysis Python package for the PLUTO code |
0 |
| enetLTS: Robust and Sparse Methods for High DimensionalLinear, Binary, and Multinomial Regression |
0 |
| Ethome: tools for machine learning of animalbehavior |
0 |
| Bernadette: Bayesian Inference and Model Selection forStochastic Epidemics in R |
0 |
| RobotDART: a versatile robot simulator for robotics andmachine learning researchers |
0 |
| Empirical: A scientific software library for research,education, and public engagement |
0 |
| PyCVI: A Python package for internal Cluster ValidityIndices, compatible with time-series data |
0 |
| NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance |
0 |
| VPsearch: fast exact sequence similarity search forgenomic sequences |
0 |
| NanoVer Server: A Python Package for Serving Real-Time Multi-User Interactive Molecular Dynamics in Virtual Reality |
0 |
| StochasticDominance.jl: A Julia Package for Higher Order Stochastic Dominance |
0 |
| Districtgenerator: Generating building-specific load profiles for residential districts. |
0 |
| UnfoldSim.jl: Simulating continuous event-based time series data for EEG and beyond |
0 |
| checkr: An R package for Assertive Programming |
0 |
| grlc: the git repository linked data API constructor. |
0 |
| SymbiotaR2: An R Package for Accessing Symbiota2 Data |
0 |
| taurenmd: A command-line interface for analysis of Molecular Dynamics simulations. |
0 |
| r2ogs6: An R wrapper of the OpenGeoSys 6 Multiphysics Simulator |
0 |
| amisrsynthdata: A Python package for generatingsynthetic data for the Advanced Modular Incoherent ScatterRadars |
0 |
| fortran-src: Fortran static analysis infrastructure |
0 |
| LangFair: A Python Package for Assessing Bias and Fairness in Large Language Model Use Cases |
0 |
| Halotools: A New Release Adding Intrinsic Alignments to Halo-Based Methods |
0 |
| QuantumACES.jl: design noise characterisation experiments for quantum computers |
0 |
| FRIEDA: Flexible Robust Intelligent Elastic Data Management Framework |
0 |
| grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions |
0 |
| LCOI: Local crystalline orientation identifier using mask fitting implemented in MATLAB |
0 |
| BioDeg: A finite element software for the simulation ofthe corrosion and biodegradation process in metallicbiomaterials |
0 |
| Mango.jl: A Julia-Based Multi-Agent SimulationFramework |
0 |
| Sciris: Simplifying scientific software inPython |
0 |
| pvOps: a Python package for empirical analysis ofphotovoltaic field data |
0 |
| otoole: OSeMOSYS Tools for Energy Work |
0 |
| pygwb: a Python-based library for gravitational-wavebackground searches |
0 |
| A Module for Calibrating Impact Functions in theClimate Risk Modeling Platform CLIMADA |
0 |
| findSVI: an R package to calculate the SocialVulnerability Index at multiple geographical levels |
0 |
| Hypredrive: High-level interface for solving linearsystems with hypre |
0 |
| Augmenty: A Python Library for Structured TextAugmentation |
0 |
| Fasten: a toolkit for streaming operations on fastqfiles |
0 |
| Pointcloud: Implementation of point clouds as graphs in the 3D plant modeling platform GroIMP |
0 |
| GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems |
0 |
| AixWeather: A Weather Data Generation Tool for Building Energy System Simulations. Pull, Transform, Export. |
0 |
| outsider: Install and run programs, outside of R, inside of R |
0 |
| studentlife: Tidy Handling and Navigation of a Valuable Mobile-Health Dataset |
0 |
| cofad: An R package and shiny app for contrast analysis |
0 |
| diman: A Clojure Package for Dimensional Analysis |
0 |
| KLRfome - Kernel Logistic Regression on Focal Mean Embeddings |
0 |
| PhotonWeave |
0 |
| Fundus Image Toolbox: A Python package for fundus image processing |
0 |
| QMKPy: A Python Testbed for the Quadratic Multiple Knapsack Problem |
0 |
| riversCentralAsia: An R package to support data pre-and postprocessing for hydrological modelling with RS MINERVE |
0 |
| APGG - A Modular C++ Framework for Asymmetric PublicGoods Games |
0 |
| robnptests – An R package for robust two-samplelocation and dispersion tests |
0 |
| hdt-rs: A Rust library for the Header DictionaryTriples binary RDF compression format |
0 |
| QMCTorch: a PyTorch Implementation of Real-SpaceQuantum Monte Carlo Simulations of Molecular Systems |
0 |
| NORDic: a Network-Oriented package for the Repurposingof Drugs |
0 |
| Zoomerjoin: Superlatively-Fast Fuzzy Joins |
0 |
| IWOPY: Fraunhofer IWES optimization tools inPython |
0 |
| simulacrumWorkflowR: An R package for Streamlined Access and Analysis of the Simulacrum Cancer Dataset |
0 |
| idinn: A Python Package for Inventory-Dynamics Control with Neural Networks |
0 |
| Underworld3: Mathematically Self-Describing Modelling in Python for Desktop, HPC and Cloud |
0 |
| PowNet 2.0: A production cost modeling framework for large-scale power systems |
0 |
| Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design |
0 |
| REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX) |
0 |
| Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes |
0 |
| Blobmodel: A Python package for generating superpositions of pulses in one and two dimensions |
0 |
| pySLM2: A full-stack python package for holographic beam shaping |
0 |
| funkyheatmap: Visualising data frames with mixed data types |
0 |
| MocoExtendProblem: Interface Between OpenSim and MATLAB for Rapidly Developing Direct Collocation Goals in Moco |
0 |
| DelaunayTriangulation.jl: A Julia package for Delaunaytriangulations and Voronoi tessellations in the plane |
0 |
| gdess: A framework for evaluating simulated atmosphericCO2 in Earth System Models |
0 |
| PIVC: A C/C++ Program for Particle Image VelocimetryVector Computation |
0 |
| MetaCast: A package for broadCASTing epidemiologicaland ecological models over META-populations. |
0 |
| Anime: Atmospheric and Instrument Models in theMeasurement Equation |
0 |
| pyradiosky: A Python package for Radio SkyModels |
0 |
| GrIML: A Python package for investigating Greenland’s ice-marginal lakes under a changing climate |
0 |
| NIMPHS: Numerous Instruments to Manipulate andPost-process Hydraulic Simulations |
0 |
| NeuroAnalyzer: Julia toolbox for analyzing neurophysiological data |
0 |
| MousebreedeR: A novel software to assist in the designof breeding schema for complex genotypes of experimentalorganisms |
0 |
| AQCNES: A Quasi-Continuum Non-EquilibriumSolver |
0 |
| Emiproc: A Python package for emission inventory processing |
0 |
| QuantizedSystemSolver: A discontinuous ODE system solver in Julia. |
0 |
| Deident: An R package for data anonymization |
0 |
| DisCoTec: Distributed higher-dimensional HPC simulations with the sparse grid combination technique |
0 |
| gridwxcomp: A Python package to evaluate and interpolate biases between station and gridded weather data |
0 |
| AutoUncertainties: A Python Package for Uncertainty Propagation |
0 |
| AutoPDEx: An Automized Partial Differential Equation solver based on JAX |
0 |
| LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia |
0 |
| Pydre: A Python package for driving simulation data reduction |
0 |
| venco.py: A Python model to represent the charging flexibility and vehicle-to-grid potential of electric vehicles in energy system models |
0 |
| quadcleanR: An R Package for the Cleanup andVisualization of Quadrat Data |
0 |
| pymgpipe: microbiome metabolic modeling inPython |
0 |
| OceanBioME.jl: A flexible environment for modelling thecoupled interactions between ocean biogeochemistry and physics |
0 |
| jointVIP: Prioritizing variables in observational studydesign with joint variable importance plot in R |
0 |
| CoSApp: a Python library to create, simulate and designcomplex systems. |
0 |
| gesel: a JavaScript package for client-side gene setenrichment |
0 |
| NBI: A library for Nystrom Boundary Integralcalculations |
0 |
| pivmet: an R package proposing pivotal methods forconsensus clustering and mixture modelling |
0 |
| abspy: A Python package for 3D adaptive binary space partitioning and modeling |
0 |
| ggret: An R package for visualising and manipulating tree‑based phylogenetic networks |
0 |
| LMDiskANN.jl: An Implementation of the Low Memory Disk Approximate Nearest Neighbors Search Algorithm |
0 |
| VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python |
0 |
| Bitstream – Binary Data for Humans |
0 |
| TimeStruct.jl – flexible multi-horizon time modelling in optimization models |
0 |
| cogsworth: A Gala of COSMIC proportions combining binary stellar evolution and galactic dynamics |
0 |
| PositiveIntegrators.jl: A Julia library of positivity-preserving time integration methods |
0 |
| Phitter: A library designed to streamline the process of fitting and analyzing probability distributions |
0 |
| CoperniFUS: A flexible Python-based GUI for stereotaxic Focused UltraSound (FUS) experiment planning |
0 |
| SweetBean: A declarative language for behavioral experiments with human and artificial participants |
0 |
| Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning |
0 |
| Simple-Web-Server: a fast and flexible HTTP/1.1 C++ client and server library |
0 |
| EWDM: A wavelet-based method for estimating directional spectra of ocean waves |
0 |
| constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators |
0 |
| ATHENA: A Fortran package for neural networks |
0 |
| BCEA: An R Package for Cost-EffectivenessAnalysis |
0 |
| Thresholdmann: A Web tool for interactively creatingadaptive thresholds to segment MRI data. |
0 |
| BoxKit: A Python library to manage analysis ofblock-structured simulation datasets |
0 |
| City2BA: Tools for creating synthetic bundle adjustmentproblems |
0 |
| Aurora: An open-source Python implementation of theEMTF package for magnetotelluric data processing using MTH5 andmt_metadata |
0 |
| ugv_nav4d: Advanced Multi-Surface Navigation forUnmanned Ground Vehicles Using 4D Path Planning Techniques |
0 |
| Choice-Learn: Large-scale choice modeling foroperational contexts through the lens of machine learning |
0 |
| islatu: A Python package for the reduction ofreflectometry data |
0 |
| elwaspatid: A Python package to compute space-timediagrams for the propagation of elastic waves in 1D rods |
0 |
| Diart: A Python Library for Real-Time SpeakerDiarization |
0 |
| Pynteny: a Python package to perform synteny-aware,profile HMM-based searches in sequence databases |
0 |
| GBNet: Gradient Boosting packages integrated into PyTorch |
0 |
| PointClouds.jl: Fast & flexible processing of lidar data |
0 |
| Improving reproducibility of cheminformatics workflows with chembl-downloader |
0 |
| SounderPy: An atmospheric sounding visualization and analysis tool for Python |
0 |
| HistoJS: Web-Based Analytical Tool for AdvancingMultiplexed Images |
0 |
| ETHOS.PeNALPS: A Tool for the Load Profile Simulationof Industrial Processes Based on a Material Flow Simulation |
0 |
| fABBA: A Python library for the fast symbolicapproximation of time series |
0 |
| Ethical Smart Grid: a Gym environment for learningethical behaviours |
0 |
| FlowerMD: Flexible Library of Organic Workflows andExtensible Recipes for Molecular Dynamics |
0 |
| dropout: an R Package for Addressing Dropouts, MissingValues, and Sectional Challenges in Survey Data Analysis |
0 |
| Renard: A Modular Pipeline for Extracting Character Networks from Narrative Texts |
0 |
| rfsed: Receiver function analysis and dealing withsediment effects |
0 |
| PAPRECA: A parallel hybrid off-lattice kinetic MonteCarlo/molecular dynamics simulator |
0 |
| Dimensionally Aligned Signal Projection AlgorithmsLibrary |
0 |
| DWIQC: A Python package for preprocessing and quality assurance of diffusion weighted images |
0 |
| Pysewer: A Python Library for Sewer Network Generation in Data Scarce Regions |
0 |
| Compare Expression Profiles for Pre-defined Gene Groups with C-REx |
0 |
| fqfa: A pure Python package for genomic sequence files |
0 |
| Virtual Bumblebees Artificial Life Simulation |
0 |
| GPP, the Generic Preprocessor |
0 |
| NEEP: null empirically estimated p-values for high-throughput molecular survival analysis |
0 |
| PsychoPhysioCollector: A Smartphone-Based Data Collection App for Psychophysiological Research |
0 |
| PyLogGrid: A Python package for fluid dynamics on logarithmic lattices |
0 |
| easyCHEM: A Python package for calculating chemical equilibrium abundances in exoplanet atmospheres |
0 |
| quickBayes: An analytical approach to Bayesian marginal likelihoods |
0 |
| Giga Connectome: a BIDS-app for time series and functional connectome extraction |
0 |
| cuisto: A Python package to quantify neurohistological data from QuPath and ABBA |
0 |
| NERD: Numerical Estimation of Rodenticide Density |
0 |
| audiomate: A Python package for working with audio datasets |
0 |
| rFBP: Replicated Focusing Belief Propagation algorithm |
0 |
| fitgrid: A Python package for multi-channel event-related time series regression modeling |
0 |
| strandCheckR: An R package for quantifying and removing double strand sequences for strand-specific RNA-seq |
0 |
| libcdict: fast dictionaries in C |
0 |
| Syn-CpG-Spacer: A Panel web app for synonymous recodingof viral genomes with CpG dinucleotides |
0 |
| pypfilt: a particle filter for Python |
0 |
| Acanthophis: a comprehensive plant hologenomicspipeline |
0 |
| SyntheticEddyMethod.jl: A Julia package for thecreation of inlet flow conditions for LES |
0 |
| occupationMeasurement: A Comprehensive Toolbox forInteractive Occupation Coding in Surveys |
0 |
| MacroModelling.jl: A Julia package for developing andsolving dynamic stochastic general equilibrium models |
0 |
| PYDAQ: Data Acquisition and Experimental Analysis withPython |
0 |
| GraphSL: An Open-Source Library for Graph SourceLocalization Approaches and Benchmark Datasets |
0 |
| PythonicDISORT: A Python reimplementation of theDiscrete Ordinate Radiative Transfer package DISORT |
0 |
| PDF Entity Annotation Tool (PEAT) |
0 |
| DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX |
0 |
| GREOPy: A Python package for solving the emitter-observer problem in general relativity |
0 |
| emba: R package for analysis and visualization of biomarkers in boolean model ensembles |
0 |
| Devicely: A Python package for reading, timeshifting and writing sensor data |
0 |
| Qlunc: Quantification of lidar uncertainty |
0 |
| bmgarch: An R-Package for Bayesian Multivariate GARCH models |
0 |
| Multiscale Solar Water Heating |
0 |
| GO-RXR: Global Optimization of Resonant X-ray Reflectometry |
0 |
| PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks |
0 |
| HINA: A Learning Analytics Tool for Heterogenous Interaction Network Analysis in Python |
0 |
| CADET-Core 5.0: High-Performance Solver for Advanced Biotechnology Process Modeling |
0 |
| TurboFlow: Meanline Modelling of Axial Turbines |
0 |
| PyGMI - a python package for geoscience modelling and interpretation |
0 |
| gaia: An R package to estimate crop yield responses to temperature and precipitation |
0 |
| HySetter: A Python Package for Reproducible Hydroclimate Data Subsetting over CONUS |
0 |
| ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access |
0 |
| Segmenteverygrain: A Python module for segmentation of grains in images |
0 |
| PyPEEC: A 3D Quasi-Magnetostatic Solver using an FFT-Accelerated PEEC Method with Voxelization |
0 |
| Hexatomic: An extensible, OS-independent platform fordeep multi-layer linguistic annotation of corpora |
0 |
| byteparsing: a functional parser combinator for mixedASCII/binary data |
0 |
| CeRULEo: Comprehensive utilitiEs for Remaining UsefulLife Estimation methOds |
0 |
| discourseGT: An R package to analyze discourse networksin educational contexts |
0 |
| Satisfiability.jl: Satisfiability Modulo Theories inJulia |
0 |
| GRBoondi: A code for evolving Generalized Procatheories on arbitrary backgrounds |
0 |
| A Library of Lower Fidelity Dynamics Models (LFDMs) ForOn-Road Vehicle Dynamics Targeting Faster Than Real-TimeApplications |
0 |
| DeepSynth: Scaling Neural Program Synthesis withDistribution-based Search |
0 |
| CVtreeMLE: Efficient Estimation of Mixed Exposuresusing Data Adaptive Decision Trees and Cross-Validated Targeted MaximumLikelihood Estimation in R |
0 |
| remotePARTS: Spatiotemporal autoregression analyses for large data sets |
0 |
| ParticleTracking: A GUI and library for particle tracking on stereo camera images |
0 |
| corrp: An R package for multiple correlation-like analysis and clustering in mixed data |
0 |
| pyScienceMode: an Open-Source Python Package to control electro-stimulator through the Hasomed’s science mode protocol |
0 |
| MEDUSA: An R tool to model equity and distributional impacts |
0 |
| VILLASnode: An Open-Source Real-time Multi-protocol Gateway |
0 |
| SeqTools: A python package for easy transformation, combination and evaluation of large datasets. |
0 |
| Reasons: A digital argument mapping library for modern browsers |
0 |
| PDFIO: PDF Reader Library for native Julia |
0 |
| Cocktail Shaker: An open source drug expansion and enumeration library for peptides |
0 |
| Nimbus: a Ruby gem to implement Random Forest algorithms in a genomic selection context |
0 |
| IDCeMPy: Python Package for Inflated Discrete Choice Models |
0 |
| Coordinate: An Android application to organize samples into grids |
0 |
| NumbaCS: A fast Python package for coherent structure analysis |
0 |
| WhaleConnect: A General-Purpose, Cross-Platform NetworkCommunication Application |
0 |
| XRTpy: A Hinode-X-Ray Telescope Python Package |
0 |
| SODA: Software to Support the Curation and Sharing ofFAIR Autonomic Nervous System Data |
0 |
| itrm: Interactive Terminal Utilities |
0 |
| libscientific: A Powerful C Library for MultivariateAnalysis |
0 |
| CRSocket: A web app component facilitating theadministration of digital trials from a separate device |
0 |
| GraphBin-Tk: assembly graph-based metagenomic binning toolkit |
0 |
| DVMDOSTEM v0.8.3: a terrestrial ecosystem model designed to represent arctic, boreal and permafrost ecosystem dynamics |
0 |
| EcoLogits: Evaluating the Environmental Impacts of Generative AI |
0 |
| AquaFetch: A Unified Python Interface for Water Resource Dataset Acquisition and Harmonization |
0 |
| PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python |
0 |
| Scikit-Longitudinal: A Machine Learning Library for Longitudinal Classification in Python |
0 |
| Ecos: An accessible and intuitive co-simulation framework |
0 |
| pyTCR: A tropical cyclone rainfall model for python |
0 |
| SAnTex: A Python-based Library for Seismic Anisotropy Calculation |
0 |
| elfe3D v1.0.1: Modelling with the total electric field approach using finite elements in 3D |
0 |
| HeXtractor: Extracting Heterogeneous Graphs from Structured and Textual Data for Graph Neural Networks |
0 |
| getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R |
0 |
| ACEInhibPKPD: An open-source MATLAB app for a pharmacokinetic/pharmacodynamic model of ACE inhibition |
0 |
| Minimalist And Customisable Optimisation Package |
0 |
| Mapelia and friends: create 3D models from maps |
0 |
| argodata: An R interface to oceanographic data from the International Argo Program |
0 |
| Lepton: An automaton for Literate Executable Papers |
0 |
| UXsim: lightweight mesoscopic traffic flow simulator in pure Python |
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| mmh3: A Python extension for MurmurHash3 |
0 |
| MDL Suite: A language, generator and compiler for describing mazes |
0 |
| HelpMe Command Line Helper Utility |
0 |
| GWSurrogate: A Python package for gravitational wave surrogate models |
0 |
| GGMnonreg: Non-Regularized Gaussian Graphical Models in R |
0 |
| imucal - A Python library to calibrate 6 DOFIMUs |
0 |
| Bruno: A Julia package for simulation, financial assetpricing and delta hedging |
0 |
| Hypercomplex: abstract & fast header-only C++template library for lattice-based cryptosystems in high-dimensionalalgebras |
0 |
| OT_Analysis: a software for rich analysis of forcecurves when probing living cells with optical tweezers |
0 |
| Eaglescope: an interactive visualization and cohortselection tool for biomedical data exploration. |
0 |
| EdgeVPN.io: Seamless Software-defined Layer 2 VirtualNetworking for Edge Computing |
0 |
| A Python Tool for Predicting and AssessingUnconventional Rare-Earth and Critical Mineral Resources |
0 |
| NeuralFieldEq.jl: A flexible solver to compute NeuralField Equations in several scenarios |
0 |
| elsa: an elegant framework for tomographicreconstruction |
0 |
| mathlib: A Scala package for readable, verifiable andsustainable simulations of formal theory |
0 |
| ADaPT-ML: A Data Programming Template for MachineLearning |
0 |
| AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning |
0 |
| QGDipoles.jl: A Julia package for calculating dipolar vortex solutions to the Quasi-Geostrophic equations |
0 |
| Tesseract Core: Universal, autodiff-native software components for Simulation Intelligence |
0 |
| UFig v1: The ultra-fast image generator |
0 |
| SCALAR - A Platform for Real-time Machine Learning Competitions on Data Streams |
0 |
| neworder: a dynamic microsimulation framework for Python |
0 |
| LINFA: a Python library for variational inference withnormalizing flow and annealing |
0 |
| ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language |
0 |
| WEdiff: A Python and C++ package for automatic differentiation |
0 |
| CytobankAPIstats: Computes Signaling and Population Statistics for Cytometry Data on Cytobank using CytobankAPI |
0 |
| Tools for Prototyping with 3D Ultrasonics in ROS |
0 |
| GASTLI: A Python package for coupled interior–atmosphere modelling of volatile-rich planets |
0 |
| Sugar: A Python framework for bioinformatics |
0 |
| Paraqus: Exporting Finite Element Simulation Results from Abaqus to VTK |
0 |
| Carnival: JVM Property graph data unification toolkit |
0 |
| PathSim - A System Simulation Framework |
0 |
| CrystalGrowthTracker: A Python package to analysecrystal face advancement rates from time lapse synchrotronradiography |
0 |
| bayes_spec: A Bayesian Spectral Line Modeling Frameworkfor Astrophysics |
0 |
| DPFEHM: a differentiable subsurface physicssimulator |
0 |
| activAnalyzer: An R Shiny app to analyse ActiGraphaccelerometer data and to implement the use of the PROactive PhysicalActivity in COPD instruments |
0 |
| ProbNumDiffEq.jl: Probabilistic Numerical Solvers forOrdinary Differential Equations in Julia |
0 |
| extendr: Frictionless bindings for R and Rust |
0 |
| SubsetTools: A Python package to subset data to buildand run ParFlow hydrologic models |
0 |
| atems: Analysis tools for TEM images of carbonaceousparticles |
0 |
| growR: R Implementation of the Vegetation ModelModVege |
0 |
| Imbalance: A comprehensive multi-interface Juliatoolbox to address class imbalance |
0 |
| SCAS dashboard: A tool to intuitively and interactivelyanalyze Slurm cluster usage |
0 |
| BenchmarkDataNLP.jl: Synthetic Data Generation for NLP Benchmarking |
0 |
| FedIRT: An R package and shiny app for estimating federated item response theory models |
0 |
| GeoBO: Python package for Multi-Objective Bayesian Optimisation and Joint Inversion in Geosciences |
0 |
| LearnSAT: A SAT Solver for Education |
0 |
| idvf: Iterative Inversion of Deformation Vector Field with Adaptive Bi-residual Feedback Control |
0 |
| multipers: Multiparameter Persistence for MachineLearning |
0 |
| ProMCDA: A Python package for Probabilistic Multi-Criteria Decision Analysis |
0 |
| SynxFlow: A GPU-accelerated Python package for multi-hazard simulations |
0 |
| open-mastr: A Python Package to Download and Processthe German Energy Registry Marktstammdatenregister |
0 |
| TopSearch: a Python package for topographical analysisof machine learning models and physical systems |
0 |
| lidarwind: A Python package for retrieving windprofiles from Doppler lidar observations |
0 |
| A Java Library for Itemset Mining withChoco-solver |
0 |
| ausdex: A Python package for adjusting Australiandollars for inflation |
0 |
| Software Design and User Interface of ESPnet-SE++:Speech Enhancement for Robust Speech Processing |
0 |
| brains-py, A framework to support research onenergy-efficient unconventional hardware for machine learning |
0 |
| CleanX: A Python library for data cleaning of largesets of radiology images |
0 |
| Chi: A Python package for treatment responsemodelling |
0 |
| biopixR: Extracting Insights from BiologicalImages |
0 |
| villager: A framework for designing and executingagent-based models in R |
0 |
| mixComp: An R package for estimating complexity of amixture |
0 |
| PyMSM: Python package for Competing Risks andMulti-State models for Survival Data |
0 |
| modisfast: An R package for fast and efficient accessto MODIS, VIIRS and GPM Earth Observation data |
0 |
| PyFPT: A Python package for first-passage times |
0 |
| An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews |
0 |
| MontePy: a Python library for reading, editing, and writing MCNP input files. |
0 |
| AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment |
0 |
| ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets |
0 |
| SWMManywhere: Synthesise Urban Drainage Network Models Anywhere in the World |
0 |
| WatchMe: Software for Reproducible Monitoring and Data Collection |
0 |
| f90nml - A Python module for Fortran namelists |
0 |
| rdbsp: An Open Source Rock Dynamic Behavior Simulation Program |
0 |
| seg1d: A Python package for Automated segmentation of one-dimensional (1D) data |
0 |
| Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations |
0 |
| ElGateau: A Library for Using the Elgato Stream Deck for Experimental Psychology Research |
0 |
| pyGOURGS - global optimization of n-ary tree representable problems using uniform random global search |
0 |
| Af-analysis: a Python package for Alphafold analysis |
0 |
| commensurability: a Python package for classifying astronomical orbits based on their toroid volume |
0 |
| EvoDynamics.jl: a framework for modelingeco-evolutionary dynamics |
0 |
| PurpleCaffeine: tracking of quantum programs andexperiments |
0 |
| TelescopeML – I. An End-to-End Python Package forInterpreting Telescope Datasets through Training Machine LearningModels, Generating Statistical Reports, and Visualizing Results |
0 |
| The Population Synthesis Toolkit (PST) Python Library |
0 |
| MatrixFuns.jl: Matrix functions in Julia |
0 |
| r3f: Rotation of 3-dimensional Reference Frames |
0 |
| gigs: A package for standardising fetal, neonatal, and child growth assessment |
0 |
| BigX: A geographical dataset visualisation tool |
0 |
| arrgh: a Go interface to the OpenCPU R server system |
0 |
| General binary file parser. |
0 |
| mctreesearch4j: A Monte Carlo Tree Search Implementation for the JVM |
0 |
| labjack-controller: Robust and Easy Data Collection with Labjack T-Series DAQs in Python |
0 |
| Multi-attribute task builder |
0 |
| Jury: A Comprehensive Evaluation Toolkit |
0 |
| Metasyn: Transparent Generation of Synthetic Tabular Data with Privacy Guarantees |
0 |
| bbousuite: A set of R packages to facilitate analysis of boreal caribou survival and recruitment data |
0 |
| KeepDelta: A Python Library for Human-Readable Data Differencing |
0 |
| spike: A Tool to Drizzle HST, JWST, and Roman PSFs for Improved Analyses |
0 |
| MQT Core: The Backbone of the Munich Quantum Toolkit (MQT) |
0 |
| FELINE: A Tool to Detect Emission Line Galaxies in 3D Data |
0 |
| Static Code Analysis for R |
0 |
| TopologicalNumbers.jl: A Julia package for topological number computation |
0 |
| gpu-ISTL - Extending OPM Flow with GPU Linear Solvers |
0 |
| rdata: A Python library for R datasets |
0 |
| fieldcompare: A Python package for regression testingsimulation results |
0 |
| sfctools - A toolbox for stock-flow consistent,agent-based models |
0 |
| libsoni: A Python Toolbox for Sonifying MusicAnnotations and Feature Representations |
0 |
| tidylda: An R Package for Latent Dirichlet AllocationUsing ‘tidyverse’ Conventions |
0 |
| FeenoX: a cloud-first finite-element(ish) computationalengineering tool |
0 |
| PyTASER: Simulating transient absorption spectroscopy(TAS) for crystals from first principles |
0 |
| Scan Session Tool: (f)MRI scan session documentationand archiving |
0 |
| pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples |
0 |
| SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python |
0 |